Gene: AT1G71200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G71200
  • Transcript Identifier AT1G71200.2
  • Gene Type Coding gene
  • Location Chr1 : 26836541-26837308 : negative

Gene Family Information

Gene Duplication Information

Labels

Identifiers

  • tid AT1G71200.2
  • uniprot F4I8F9

Descriptions

  • Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  • Computational description basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G56970.1); Has 331 Blast hits to 331 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 2; Plants - 78; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
IEA
Gene Ontologyregulation of transcription by RNA polymerase II1
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0071280
IMP
Gene Ontologycellular response to copper ion2
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific1
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
ISS
IEA
Gene OntologyDNA-binding transcription factor activity3
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000977
IBA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus2
GO:0090575
IBA
Gene OntologyRNA polymerase II transcription regulator complex1
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015660 Achaete-scute transcription factor-related
IPR036638 Helix-loop-helix DNA-binding domain superfamily
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Mapman id Description
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
25.4.2.1.6 Nutrient uptake.metal homeostasis.iron.regulation.bHLH-Ib-class iron/copper homeostasis regulator
25.4.3.1.3 Nutrient uptake.metal homeostasis.copper.regulation.bHLH-Ib-class iron/copper homeostasis regulator