Gene: AT1G69940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G69940
  • Transcript Identifier AT1G69940.1
  • Gene Type Coding gene
  • Location Chr1 : 26343549-26344971 : negative

Gene Family Information

  • ID HOM05D000165
  • #Genes/#Species 2272/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G69940.1
  • symbol PPME1
  • uniprot Q84WM7

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description PPME1; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G07410.1); Has 2422 Blast hits to 2374 proteins in 311 species: Archae - 6; Bacteria - 595; Metazoa - 1; Fungi - 194; Plants - 1601; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045490
IBA
IEA
Gene Ontologypectin catabolic process1
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT5G07410
GO:0042545
IEA
Gene Ontologycell wall modification
GO:0042545
IEA
InterProcell wall modification
GO:0071555
IEA
GOA Databasecell wall organization
GO:0050829
IMP
Gene Ontologydefense response to Gram-negative bacterium2
GO:0009860
IDA, IMP
Gene Ontologypollen tube growth3 4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030599
IEA
GOA Databasepectinesterase activity
GO:0030599
IMP
IBA
Gene Ontologypectinesterase activity1 3
GO:0030599
IEA
InterPropectinesterase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0045330
IEA
GOA Databaseaspartyl esterase activity
GO:0052689
IBA
Gene Ontologycarboxylic ester hydrolase activity1
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0005783
NAS
Gene Ontologyendoplasmic reticulum3
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
NAS
Gene OntologyGolgi apparatus3
GO:0005618
IEA
GOA Databasecell wall
GO:0009505
IDA
Gene Ontologyplant-type cell wall4
GO:0090406
IDA
Gene Ontologypollen tube3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012334 Pectin lyase fold
IPR011050 Pectin lyase fold/virulence factor
IPR000070 Pectinesterase, catalytic
Mapman id Description
21.3.1.2.1 Cell wall organisation.pectin.homogalacturonan.modification and degradation.pectin methylesterase