Gene: AT1G66050

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G66050
  • Transcript Identifier AT1G66050.1
  • Gene Type Coding gene
  • Location Chr1 : 24589534-24592616 : positive

Gene Family Information

  • ID HOM05D001972
  • #Genes/#Species 335/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G66050.1
  • symbol VIM2
  • Alias ORTH5,ORTHRUS 5
  • full_name VARIANT IN METHYLATION 2
  • uniprot Q680I0

Descriptions

  • Description Zinc finger (C3HC4-type RING finger) family protein
  • Computational description VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090309
IMP
Gene Ontologypositive regulation of DNA methylation-dependent heterochromatin assembly1
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G39550
GO:0010424
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequence AT5G39550
GO:0006325
IEA
GOA Databasechromatin organization
GO:0016567
IDA
IBA
IEA
Gene Ontologyprotein ubiquitination2 3
GO:0010216
IBA
Gene Ontologymaintenance of DNA methylation3
GO:0032776
IMP
Gene OntologyDNA methylation on cytosine4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0061630
IBA
Gene Ontologyubiquitin protein ligase activity3
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2
GO:0042393
ISS
Gene Ontologyhistone binding
GO:0010429
ISS
Gene Ontologymethyl-CpNpN binding
GO:0010428
ISS
Gene Ontologymethyl-CpNpG binding
GO:0008327
ISS
Gene Ontologymethyl-CpG binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001965 Zinc finger, PHD-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR003105 SRA-YDG
IPR011011 Zinc finger, FYVE/PHD-type
IPR027370 RING-type zinc-finger, LisH dimerisation motif
IPR045134 UHRF1/2-like
IPR015947 PUA-like superfamily
IPR001841 Zinc finger, RING-type
IPR036987 SRA-YDG superfamily
Mapman id Description
12.5.2.3 Chromatin organisation.DNA methylation.RNA-independent DNA methylation.regulatory cofactor (ORTH/VIM)