Gene: AT1G62830

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G62830
  • Transcript Identifier AT1G62830.1
  • Gene Type Coding gene
  • Location Chr1 : 23264638-23267172 : negative

Gene Family Information

  • ID HOM05D000461
  • #Genes/#Species 1145/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G62830.1
  • symbol LDL1
  • Alias ATLSD1,ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE,ATSWP1,LSD1,LYSINE-SPECIFIC HISTONE DEMETHYLASE,SWP1
  • uniprot Q8VXV7

Descriptions

  • Description LSD1-like 1
  • Computational description LSD1-like 1 (LDL1); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 6747 Blast hits to 5826 proteins in 999 species: Archae - 53; Bacteria - 2706; Metazoa - 1658; Fungi - 565; Plants - 779; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051568
IMP
Gene Ontologyhistone H3-K4 methylation1
GO:0016575
IMP
Gene Ontologyhistone deacetylation2
GO:0048364
IMP
Gene Ontologyroot development2
GO:0045892
IDA
Gene Ontologynegative regulation of transcription, DNA-templated3
GO:0006325
IEA
GOA Databasechromatin organization

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0005515
IEA
InterProprotein binding
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IBA
Gene Ontologyoxidoreductase activity4
GO:0016491
IEA
InterProoxidoreductase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus2 4
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IDA
Gene Ontologycytoplasm3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007526 SWIRM domain
IPR002937 Amine oxidase
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR009057 Homeobox-like domain superfamily
IPR036188 FAD/NAD(P)-binding domain superfamily
Mapman id Description
12.3.3.7.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.AOD group histone demethylase activities.lysine-specific demethylase (LDL/KDM1)