Gene: AT1G56570
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G56570
- Transcript Identifier AT1G56570.2
- Gene Type Coding gene
- Location Chr1 : 21195804-21197721 : positive
Gene Family Information
- ID HOM05D000001
- #Genes/#Species 35287/100
- Phylogenetic origin
- ID ORTHO05D009381
- #Genes/#Species 103/80
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G56570.2
- symbol PGN
- full_name PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl
- uniprot Q9FXA9
Descriptions
- Description Tetratricopeptide repeat (TPR)-like superfamily protein
- Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 40728 Blast hits to 13683 proteins in 261 species: Archae - 0; Bacteria - 8; Metazoa - 114; Fungi - 83; Plants - 40006; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009651 | IMP | Gene Ontology | response to salt stress | 1 |
| GO:0009737 | IMP | Gene Ontology | response to abscisic acid | 1 |
| GO:0009749 | IMP | Gene Ontology | response to glucose | 1 |
| GO:0050832 | IMP | Gene Ontology | defense response to fungus | 1 |
| GO:0009451 | IBA | Gene Ontology | RNA modification | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IBA | Gene Ontology | RNA binding | 2 |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0005739 | IDA | Gene Ontology | mitochondrion | 1 |
| GO:0043231 | IBA | Gene Ontology | intracellular membrane-bounded organelle | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.11.3.3.4.64 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (PGN) |