Gene: AT1G56040

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G56040
  • Transcript Identifier AT1G56040.1
  • Gene Type Coding gene
  • Location Chr1 : 20960356-20961870 : negative

Gene Family Information

  • ID HOM05D000163
  • #Genes/#Species 2281/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G56040.1
  • uniprot Q9SGT2

Descriptions

  • Description HEAT/U-box protein
  • Computational description HEAT/U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: RNA metabolic process, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G56030.1); Has 48380 Blast hits to 31280 proteins in 1863 species: Archae - 590; Bacteria - 5184; Metazoa - 24219; Fungi - 3107; Plants - 3498; Viruses - 126; Other Eukaryotes - 11656 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IEA
InterProprotein ubiquitination
GO:0006468
ISO
PLAZA Homology (enrichment)protein phosphorylation HOM05D000163

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000163
GO:0004672
ISO
PLAZA Homology (enrichment)protein kinase activity HOM05D000163

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR016024 Armadillo-type fold
Mapman id Description
35.1 not assigned.annotated