Gene: AT1G54270

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G54270
  • Transcript Identifier AT1G54270.1
  • Gene Type Coding gene
  • Location Chr1 : 20260495-20262018 : positive

Gene Family Information

  • ID HOM05D000250
  • #Genes/#Species 1697/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G54270.1
  • symbol EIF4A-2
  • uniprot P41377

Descriptions

  • Description eif4a-2
  • Computational description eif4a-2 (EIF4A-2); FUNCTIONS IN: ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A1 (TAIR:AT3G13920.1); Has 47858 Blast hits to 47246 proteins in 3099 species: Archae - 743; Bacteria - 25967; Metazoa - 6043; Fungi - 4764; Plants - 2602; Viruses - 17; Other Eukaryotes - 7722 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc06g062800.4
GO:0006413
IEA
GOA Databasetranslational initiation
GO:0006412
IEA
GOA Databasetranslation
GO:0002183
IBA
Gene Ontologycytoplasmic translational initiation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003743
IEA
GOA Databasetranslation initiation factor activity
GO:0003743
ISS, IBA
Gene Ontologytranslation initiation factor activity1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0003724
IEA
Gene OntologyRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol5
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane6
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
HDA
Gene Ontologynucleus7
GO:0005794
RCA
Gene OntologyGolgi apparatus8
GO:0000325
HDA
Gene Ontologyplant-type vacuole9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR011545 DEAD/DEAH box helicase domain
IPR027417 P-loop containing nucleoside triphosphate hydrolase
Mapman id Description
17.4.2.1 Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A)