Gene: AT1G53470

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G53470
  • Transcript Identifier AT1G53470.1
  • Gene Type Coding gene
  • Location Chr1 : 19958587-19961578 : positive

Gene Family Information

  • ID HOM05D000560
  • #Genes/#Species 984/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G53470.1
  • symbol MSL4
  • uniprot Q9LPG3

Descriptions

  • Description mechanosensitive channel of small conductance-like 4
  • Computational description mechanosensitive channel of small conductance-like 4 (MSL4); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1); Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163; Bacteria - 2328; Metazoa - 1; Fungi - 210; Plants - 229; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006820
IBA
Gene Ontologyanion transport1
GO:0034220
IEA
GOA Databaseion transmembrane transport
GO:0006811
IEA
GOA Databaseion transport
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0055085
IEA
InterProtransmembrane transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008381
IBA
Gene Ontologymechanosensitive ion channel activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
IBA
Gene Ontologyplasma membrane1 2
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023408 Mechanosensitive ion channel MscS domain superfamily
IPR006685 Mechanosensitive ion channel MscS
IPR016688 Mechanosensitive ion channel MscS-like, plants/fungi
IPR010920 LSM domain superfamily
Mapman id Description
24.3.5 Solute transport.channels.mechanosensitive ion channel (MSL)