Gene: AT1G52830
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G52830
- Transcript Identifier AT1G52830.1
- Gene Type Coding gene
- Location Chr1 : 19672670-19673559 : negative
Gene Family Information
- ID HOM05D000117
- #Genes/#Species 2876/97
- Phylogenetic origin
- ID ORTHO05D000070
- #Genes/#Species 2531/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G52830.1
- symbol IAA6
- Alias SHY1,SHORT HYPOCOTYL 1
- uniprot Q38824
Descriptions
- Description indole-3-acetic acid 6
- Computational description indole-3-acetic acid 6 (IAA6); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 19 (TAIR:AT3G15540.1); Has 1737 Blast hits to 1736 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1736; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | Gene Ontology | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009733 | IMP, IEP | Gene Ontology | response to auxin | 1 |
| GO:0009704 | IMP | Gene Ontology | de-etiolation | 2 |
| GO:0009734 | IEA | GOA Database | auxin-activated signaling pathway |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 3 |
| GO:0042802 | IPI | Gene Ontology | identical protein binding | 4 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS, ISM | Gene Ontology | nucleus | 1 |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 11.2.2.2 | Phytohormone action.auxin.perception and signal transduction.transcriptional repressor (IAA/AUX) |