Gene: AT1G50410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G50410
  • Transcript Identifier AT1G50410.4
  • Gene Type Coding gene
  • Location Chr1 : 18672828-18676890 : positive

Gene Family Information

  • ID HOM05D000515
  • #Genes/#Species 1048/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G50410.4
  • Alias CHR28,chromatin remodeling 28,FRG2,SNF2-RING-HELICASE?LIKE 2
  • uniprot Q94BR5

Descriptions

  • Description SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein
  • Computational description SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT3G20010.1); Has 25748 Blast hits to 15874 proteins in 1868 species: Archae - 87; Bacteria - 8136; Metazoa - 6127; Fungi - 5385; Plants - 2378; Viruses - 150; Other Eukaryotes - 3485 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080188
IMP
Gene Ontologygene silencing by RNA-directed DNA methylation1
GO:0006325
IEA
GOA Databasechromatin organization
GO:0031047
IEA
GOA Databasegene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
Gene OntologyATP binding
GO:0005524
IEA
InterProATP binding
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR000330 SNF2, N-terminal
Mapman id Description
12.4.8.3.3 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Ris1)