Gene: AT1G50280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G50280
  • Transcript Identifier AT1G50280.1
  • Gene Type Coding gene
  • Location Chr1 : 18623857-18626292 : negative

Gene Family Information

  • ID HOM05D000091
  • #Genes/#Species 3486/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G50280.1
  • uniprot Q8RXR6

Descriptions

  • Description Phototropic-responsive NPH3 family protein
  • Computational description Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 794 Blast hits to 779 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 789; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
Gene Ontologyprotein ubiquitination
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0031463
IPI
Gene OntologyCul3-RING ubiquitin ligase complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027356 NPH3 domain
IPR011333 SKP1/BTB/POZ domain superfamily
IPR043454 NPH3/RPT2-like family
Mapman id Description
19.2.2.8.2.2.5 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.BTB/POZ substrate adaptor activities.substate adaptor (BPH1)