Gene: AT1G49600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G49600
  • Transcript Identifier AT1G49600.3
  • Gene Type Coding gene
  • Location Chr1 : 18357827-18360150 : negative

Gene Family Information

  • ID HOM05D000561
  • #Genes/#Species 984/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G49600.3
  • symbol RBP47A
  • Alias ATRBP47A,RNA-binding protein 47A
  • uniprot F4I3B3

Descriptions

  • Description RNA-binding protein 47A
  • Computational description RNA-binding protein 47A (RBP47A); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47B (TAIR:AT3G19130.1); Has 46260 Blast hits to 24920 proteins in 980 species: Archae - 10; Bacteria - 2612; Metazoa - 22234; Fungi - 5462; Plants - 7399; Viruses - 56; Other Eukaryotes - 8487 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034605
ISS
Gene Ontologycellular response to heat
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008143
ISS
Gene Ontologypoly(A) binding1
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 3 4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, ISM
Gene Ontologynucleus
GO:0009507
ISM
Gene Ontologychloroplast
GO:0010494
ISS
Gene Ontologycytoplasmic stress granule
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
IBA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.8.4 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47)