Gene: AT1G48790
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G48790
- Transcript Identifier AT1G48790.1
- Gene Type Coding gene
- Location Chr1 : 18043925-18047427 : negative
Gene Family Information
- ID HOM05D001397
- #Genes/#Species 448/98
- Phylogenetic origin
- ID ORTHO05D001300
- #Genes/#Species 437/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G48790.1
- symbol AMSH1
- uniprot Q8VYB5
Descriptions
- Description associated molecule with the SH3 domain of STAM 1
- Computational description associated molecule with the SH3 domain of STAM 1 (AMSH1); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1172 Blast hits to 1019 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 293; Plants - 278; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006508 | IEA | GOA Database | proteolysis | |
| GO:0070536 | IEA | GOA Database | protein K63-linked deubiquitination | |
| GO:0070536 | ISS, IBA | Gene Ontology | protein K63-linked deubiquitination | 1 |
| GO:0070536 | IEA | InterPro | protein K63-linked deubiquitination | |
| GO:0016579 | IEA | GOA Database | protein deubiquitination | |
| GO:0016579 | IEA | InterPro | protein deubiquitination | |
| GO:0071108 | ISS, IBA | Gene Ontology | protein K48-linked deubiquitination | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0061578 | IEA | Gene Ontology | Lys63-specific deubiquitinase activity | |
| GO:0061578 | IEA | InterPro | Lys63-specific deubiquitinase activity | |
| GO:0070122 | IEA | Gene Ontology | isopeptidase activity | |
| GO:0070122 | IEA | InterPro | isopeptidase activity | |
| GO:0008237 | IEA | GOA Database | metallopeptidase activity | |
| GO:0008237 | IEA | InterPro | metallopeptidase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008233 | IEA | GOA Database | peptidase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0004843 | IBA | Gene Ontology | thiol-dependent deubiquitinase | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | ISS, IBA | Gene Ontology | membrane | 1 |
| GO:0005768 | IBA | Gene Ontology | endosome | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 22.4.3.2.1 | Vesicle trafficking.endocytic trafficking.ubiquitylated cargo adaptation.cargo deubiquitination.deubiquitinase (AMSH) |