Gene: AT1G47490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G47490
  • Transcript Identifier AT1G47490.2
  • Gene Type Coding gene
  • Location Chr1 : 17424801-17426114 : positive

Gene Family Information

  • ID HOM05D000561
  • #Genes/#Species 984/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G47490.2
  • symbol RBP47C
  • Alias ATRBP47C,RNA-binding protein 47C
  • uniprot Q9SX79

Descriptions

  • Description RNA-binding protein 47C
  • Computational description RNA-binding protein 47C (RBP47C); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C' (TAIR:AT1G47500.1); Has 33065 Blast hits to 20848 proteins in 888 species: Archae - 16; Bacteria - 2226; Metazoa - 17066; Fungi - 3800; Plants - 6752; Viruses - 82; Other Eukaryotes - 3123 (source: NCBI BLink).
  • Computational description RNA-binding protein 47C (RBP47C); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47C' (TAIR:AT1G47500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034605
ISS
Gene Ontologycellular response to heat
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008143
ISS
Gene Ontologypoly(A) binding1
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 3 4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS
Gene Ontologynucleus
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
ISM
Gene Ontologychloroplast
GO:0010494
ISS
Gene Ontologycytoplasmic stress granule
GO:0005829
IBA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.8.4 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47)