Gene: AT1G27910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27910
  • Transcript Identifier AT1G27910.1
  • Gene Type Coding gene
  • Location Chr1 : 9720962-9723975 : negative

Gene Family Information

  • ID HOM05D000577
  • #Genes/#Species 965/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27910.1
  • symbol PUB45
  • Alias ATPUB45,ARABIDOPSIS THALIANA PLANT U-BOX 45
  • uniprot Q9C7G1

Descriptions

  • Description plant U-box 45
  • Computational description plant U-box 45 (PUB45); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 2726 Blast hits to 2661 proteins in 214 species: Archae - 0; Bacteria - 25; Metazoa - 192; Fungi - 159; Plants - 2120; Viruses - 3; Other Eukaryotes - 227 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IDA
IEA
Gene Ontologyprotein ubiquitination1
GO:0016567
IEA
InterProprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity1
GO:0004842
IEA
InterProubiquitin-protein transferase activity
GO:0070696
IPI
Gene Ontologytransmembrane receptor protein serine/threonine kinase binding2
GO:0016740
IEA
GOA Databasetransferase activity
GO:0005515
IEA
InterProprotein binding
GO:0016791
ISO
PLAZA Homology (enrichment)phosphatase activity HOM05D000577

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM, IBA
Gene Ontologycytoplasm3
GO:0005634
IBA
Gene Ontologynucleus3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003613 U box domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR000225 Armadillo
IPR011989 Armadillo-like helical
IPR016024 Armadillo-type fold
Mapman id Description
19.2.2.1.4.2.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.U-Box E3 ligase activities.group-II ligase