Gene: AT1G27600

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27600
  • Transcript Identifier AT1G27600.2
  • Gene Type Coding gene
  • Location Chr1 : 9604083-9605881 : negative

Gene Family Information

  • ID HOM05D001631
  • #Genes/#Species 395/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27600.2
  • symbol IRX9-L
  • Alias I9H,IRREGULAR XYLEM 9 Homolog
  • full_name IRREGULAR XYLEM 9-LIKE
  • uniprot Q9SXC4

Descriptions

  • Description Nucleotide-diphospho-sugar transferases superfamily protein
  • Computational description IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 684 Blast hits to 682 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 425; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
  • Computational description IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IBA
Gene Ontologycarbohydrate metabolic process1
GO:0071555
IEA
GOA Databasecell wall organization
GO:0009834
IMP
IBA
Gene Ontologyplant-type secondary cell wall biogenesis1 2
GO:0010417
IMP
IBA
Gene Ontologyglucuronoxylan biosynthetic process1 2
GO:0045492
IMP
Gene Ontologyxylan biosynthetic process3
GO:0010584
IMP
Gene Ontologypollen exine formation4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015018
IEA
Gene Ontologygalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
GO:0015018
IEA
InterProgalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016757
IEA
GOA Databaseglycosyltransferase activity
GO:0016757
ISS
Gene Ontologyglycosyltransferase activity
GO:0042285
IMP
IBA
Gene Ontologyxylosyltransferase activity1 2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IEA
InterPromembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005794
IDA
Gene OntologyGolgi apparatus2
GO:0000139
IEA
GOA DatabaseGolgi membrane
GO:0000139
IBA
Gene OntologyGolgi membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005027 Glycosyl transferase, family 43
IPR029044 Nucleotide-diphospho-sugar transferases
Mapman id Description
21.2.2.1.3.1 Cell wall organisation.hemicellulose.xylan.biosynthesis.xylosyltransferase activities.xylosyltransferase (IRX9)