Gene: AT1G24220
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G24220
- Transcript Identifier AT1G24220.1
- Gene Type Coding gene
- Location Chr1 : 8578658-8582413 : negative
Gene Family Information
- ID HOM05D000629
- #Genes/#Species 905/100
- Phylogenetic origin
- ID ORTHO05D038595
- #Genes/#Species 2/2
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G24220.1
- uniprot O48689
Descriptions
- Description paired amphipathic helix repeat-containing protein
- Computational description paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 1794 Blast hits to 623 proteins in 172 species: Archae - 0; Bacteria - 12; Metazoa - 580; Fungi - 353; Plants - 743; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016575 | IBA | Gene Ontology | histone deacetylation | 1 |
| GO:0000122 | IBA | Gene Ontology | negative regulation of transcription by RNA polymerase II | 1 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003714 | IEA | GOA Database | transcription corepressor activity | |
| GO:0003714 | IBA | Gene Ontology | transcription corepressor activity | 1 |
| GO:0003714 | IEA | InterPro | transcription corepressor activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000785 | IBA | Gene Ontology | chromatin | 1 |
| GO:0000118 | IBA | Gene Ontology | histone deacetylase complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |