Gene: AT1G22780

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G22780
  • Transcript Identifier AT1G22780.1
  • Gene Type Coding gene
  • Location Chr1 : 8067990-8069163 : positive

Gene Family Information

  • ID HOM05D000366
  • #Genes/#Species 1311/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G22780.1
  • symbol PFL
  • Alias PFL1,POINTED FIRST LEAVES 1,RPS18A,40S RIBOSOMAL PROTEIN S18
  • full_name POINTED FIRST LEAVES
  • uniprot Q5PNZ9

Descriptions

  • Description Ribosomal protein S13/S18 family
  • Computational description POINTED FIRST LEAVES (PFL); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translational initiation, translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, small ribosomal subunit, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006412
IEA
InterProtranslation
GO:0006413
TAS
Gene Ontologytranslational initiation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G34030
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015935
ISO
PLAZA Integrative Orthologysmall ribosomal subunit AT4G09800
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005634
HDA
Gene Ontologynucleus4
GO:0005794
RCA
Gene OntologyGolgi apparatus5
GO:0009506
HDA
Gene Ontologyplasmodesma6
GO:0022627
HDA
Gene Ontologycytosolic small ribosomal subunit7
GO:0000325
HDA
Gene Ontologyplant-type vacuole8
GO:0009505
HDA
Gene Ontologyplant-type cell wall9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001892 Ribosomal protein S13
IPR027437 30s ribosomal protein S13, C-terminal
IPR010979 Ribosomal protein S13-like, H2TH
Mapman id Description
17.1.3.1.20 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS18