Gene: AT1G21880
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G21880
- Transcript Identifier AT1G21880.2
- Gene Type Coding gene
- Location Chr1 : 7680689-7682526 : positive
Gene Family Information
- ID HOM05D001808
- #Genes/#Species 362/95
- Phylogenetic origin
- ID ORTHO05D001747
- #Genes/#Species 360/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G21880.2
- symbol LYM1
- Alias LYP2,LysM-containing receptor protein 2
- uniprot Q93ZH0
Descriptions
- Description lysm domain GPI-anchored protein 1 precursor
- Computational description lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 655 Blast hits to 634 proteins in 130 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 1; Plants - 403; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
- Computational description lysm domain GPI-anchored protein 1 precursor (LYM1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT1G77630.1); Has 660 Blast hits to 639 proteins in 131 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 1; Plants - 404; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006955 | IMP | Gene Ontology | immune response | 1 |
| GO:0006952 | IEA | GOA Database | defense response |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042834 | IDA | Gene Ontology | peptidoglycan binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | GOA Database | extracellular region | |
| GO:0005576 | ISM | Gene Ontology | extracellular region | |
| GO:0031225 | IEA | GOA Database | anchored component of membrane | |
| GO:0031225 | TAS | Gene Ontology | anchored component of membrane | 2 |
| GO:0046658 | IDA | Gene Ontology | anchored component of plasma membrane | 3 |
| GO:0005886 | IDA IEA | GOA Database | plasma membrane | |
| GO:0005886 | HDA | Gene Ontology | plasma membrane | 4 |
| GO:0005634 | HDA | Gene Ontology | nucleus | 5 |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |