Gene: AT1G17150

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G17150
  • Transcript Identifier AT1G17150.1
  • Gene Type Coding gene
  • Location Chr1 : 5865707-5867495 : positive

Gene Family Information

  • ID HOM05D000037
  • #Genes/#Species 5045/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G17150.1
  • uniprot F4I650

Descriptions

  • Description Pectin lyase-like superfamily protein
  • Computational description Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G43080.1); Has 3925 Blast hits to 3904 proteins in 469 species: Archae - 4; Bacteria - 1051; Metazoa - 14; Fungi - 1254; Plants - 1494; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IEA
Gene Ontologypolygalacturonase activity
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005618
IEA
GOA Databasecell wall

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000743 Glycoside hydrolase, family 28
IPR012334 Pectin lyase fold
IPR011050 Pectin lyase fold/virulence factor
Mapman id Description
21.3.5.3 Cell wall organisation.pectin.modification and degradation.pectin lyase