Gene: AT1G17130

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G17130
  • Transcript Identifier AT1G17130.2
  • Gene Type Coding gene
  • Location Chr1 : 5854264-5856472 : positive

Gene Family Information

  • ID HOM05D002017
  • #Genes/#Species 328/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G17130.2
  • uniprot Q9SHH1

Descriptions

  • Description coiled-coil protein (DUF572)
  • Computational description Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0; Bacteria - 51; Metazoa - 442; Fungi - 351; Plants - 150; Viruses - 5; Other Eukaryotes - 378 (source: NCBI BLink).
  • Computational description Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1391 Blast hits to 1324 proteins in 252 species: Archae - 3; Bacteria - 52; Metazoa - 454; Fungi - 341; Plants - 148; Viruses - 5; Other Eukaryotes - 388 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0008380
IMP
IBA
Gene OntologyRNA splicing1 2
GO:0000349
IEA
GOA Databasegeneration of catalytic spliceosome for first transesterification step
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0071006
IEA
GOA DatabaseU2-type catalytic step 1 spliceosome
GO:0071006
IBA
Gene OntologyU2-type catalytic step 1 spliceosome1
GO:0005681
IEA
GOA Databasespliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007590 Saf4/Yju2 protein
Mapman id Description
35.1 not assigned.annotated