Gene: AT1G11650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G11650
  • Transcript Identifier AT1G11650.2
  • Gene Type Coding gene
  • Location Chr1 : 3914895-3917941 : positive

Gene Family Information

  • ID HOM05D000561
  • #Genes/#Species 984/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G11650.2
  • symbol RBP45B
  • uniprot Q9SAB3

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 20995 Blast hits to 13178 proteins in 763 species: Archae - 6; Bacteria - 1690; Metazoa - 10875; Fungi - 2403; Plants - 4255; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).
  • Computational description RBP45B; FUNCTIONS IN: RNA binding; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29660 Blast hits to 18296 proteins in 811 species: Archae - 14; Bacteria - 2273; Metazoa - 15265; Fungi - 3531; Plants - 5870; Viruses - 0; Other Eukaryotes - 2707 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051028
ISO
PLAZA Integrative OrthologymRNA transport Os04g0625800
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0010193
IEP
Gene Ontologyresponse to ozone1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 3 4
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Os04g0625800
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0008143
ISS
Gene Ontologypoly(A) binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm Os04g0625800
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS
Gene Ontologynucleus5
GO:0005829
IBA
Gene Ontologycytosol2
GO:0005576
HDA
Gene Ontologyextracellular region6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.8.4 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (RBP45/47)