Gene: AT1G08820

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G08820
  • Transcript Identifier AT1G08820.5
  • Gene Type Coding gene
  • Location Chr1 : 2821810-2824412 : negative

Gene Family Information

  • ID HOM05D000584
  • #Genes/#Species 950/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G08820.5
  • symbol VAP27-2
  • uniprot B9DHD7

Descriptions

  • Description vamp/synaptobrevin-associated protein 27-2
  • Computational description vamp/synaptobrevin-associated protein 27-2 (VAP27-2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular transport; LOCATED IN: plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1156 Blast hits to 1101 proteins in 218 species: Archae - 0; Bacteria - 19; Metazoa - 465; Fungi - 159; Plants - 427; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046907
TAS
Gene Ontologyintracellular transport1
GO:0061817
IBA
Gene Ontologyendoplasmic reticulum-plasma membrane tethering2
GO:0090158
IBA
Gene Ontologyendoplasmic reticulum membrane organization2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005789
IDA
IBA
Gene Ontologyendoplasmic reticulum membrane1 2
GO:0005789
IEA
InterProendoplasmic reticulum membrane
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
IBA
Gene Ontologyplasma membrane2 3
GO:0005576
HDA
Gene Ontologyextracellular region4
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0005783
IEA
GOA Databaseendoplasmic reticulum

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR008962 PapD-like superfamily
IPR013783 Immunoglobulin-like fold
IPR016763 Vesicle-associated membrane-protein-associated protein
IPR000535 Major sperm protein (MSP) domain
Mapman id Description
20.7.1 Cytoskeleton organisation.endoplasmic reticulum-cytoskeleton-plasma membrane interface.contact site protein (VAP27)