Gene: AT1G07090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G07090
  • Transcript Identifier AT1G07090.1
  • Gene Type Coding gene
  • Location Chr1 : 2174202-2174792 : negative

Gene Family Information

  • ID HOM05D000378
  • #Genes/#Species 1291/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G07090.1
  • symbol LSH6
  • full_name LIGHT SENSITIVE HYPOCOTYLS 6
  • uniprot Q9LMK2

Descriptions

  • Description LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
  • Computational description LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009299
ISS, IBA
Gene OntologymRNA transcription1
GO:0090698
ISS
Gene Ontologypost-embryonic plant morphogenesis
GO:0009416
IBA
Gene Ontologyresponse to light stimulus1
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development Os07g0139300
GO:0048449
ISO
PLAZA Integrative Orthologyfloral organ formation Os07g0139300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040222 ALOG family
IPR006936 ALOG domain
Mapman id Description
35.1 not assigned.annotated