Gene: AT1G05850

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G05850
  • Transcript Identifier AT1G05850.2
  • Gene Type Coding gene
  • Location Chr1 : 1766833-1768117 : negative

Gene Family Information

  • ID HOM05D000242
  • #Genes/#Species 1731/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G05850.2
  • symbol POM1
  • Alias ATCTL1,CTL1,CHITINASE-LIKE PROTEIN 1,ELP1,ECTOPIC DEPOSITION OF LIGNIN IN PITH 1,ELP,ECTOPIC DEPOSITION OF LIGNIN IN PITH,ERH2,ECTOPIC ROOT HAIR 2,HOT2,SENSITIVE TO HOT TEMPERATURES 2
  • full_name POM-POM1
  • uniprot Q9MA41

Descriptions

  • Description Chitinase family protein
  • Computational description POM-POM1 (POM1); FUNCTIONS IN: chitinase activity; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: chitinase-like protein 2 (TAIR:AT3G16920.1); Has 1965 Blast hits to 1960 proteins in 417 species: Archae - 0; Bacteria - 470; Metazoa - 35; Fungi - 5; Plants - 1415; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030244
IMP
Gene Ontologycellulose biosynthetic process1
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0016998
IEA
Gene Ontologycell wall macromolecule catabolic process
GO:0016998
IEA
InterProcell wall macromolecule catabolic process
GO:0006032
IEA
Gene Ontologychitin catabolic process
GO:0006032
IEA
InterProchitin catabolic process
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway
GO:0010053
IMP
Gene Ontologyroot epidermal cell differentiation2
GO:0001708
IMP
Gene Ontologycell fate specification2
GO:0009825
IMP
Gene Ontologymultidimensional cell growth3
GO:0010167
IMP
Gene Ontologyresponse to nitrate4
GO:0010337
IMP
Gene Ontologyregulation of salicylic acid metabolic process5
GO:0009651
IMP
Gene Ontologyresponse to salt stress5
GO:0009414
IMP
Gene Ontologyresponse to water deprivation5
GO:0043255
IGI
Gene Ontologyregulation of carbohydrate biosynthetic process6
GO:0009809
IGI
Gene Ontologylignin biosynthetic process6
GO:0009735
IMP
Gene Ontologyresponse to cytokinin7
GO:0009408
IMP
Gene Ontologyresponse to heat8

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008061
ISO
PLAZA Homology (enrichment)chitin binding HOM05D000242
GO:0004568
IDA
Gene Ontologychitinase activity4
GO:0004568
IEA
InterProchitinase activity
GO:0030247
IDA
Gene Ontologypolysaccharide binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0048046
IDA
Gene Ontologyapoplast1
GO:0005794
IDA
Gene OntologyGolgi apparatus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000726 Glycoside hydrolase, family 19, catalytic
IPR016283 Glycoside hydrolase, family 19
IPR023346 Lysozyme-like domain superfamily
Mapman id Description
21.1.2.1 Cell wall organisation.cellulose.cellulose-hemicellulose network assembly.regulatory protein (CTL)