Gene: AT1G05490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G05490
  • Transcript Identifier AT1G05490.1
  • Gene Type Coding gene
  • Location Chr1 : 1618795-1623195 : negative

Gene Family Information

  • ID HOM05D000725
  • #Genes/#Species 800/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G05490.1
  • symbol chr31
  • uniprot F4I8S3

Descriptions

  • Description chromatin remodeling 31
  • Computational description chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080188
IEA
Gene Ontologygene silencing by RNA-directed DNA methylation
GO:0080188
IEA
InterProgene silencing by RNA-directed DNA methylation
GO:1900370
IMP
Gene Ontologypositive regulation of RNA interference1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004386
IEA
GOA Databasehelicase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044567 SNF2 domain-containing protein CLSY/DRD1
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR000330 SNF2, N-terminal
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
16.9.1.2 RNA processing.mRNA silencing.transacting siRNA pathway.regulatory protein (CLSY3/4)