Gene: AT1G05260
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G05260
- Transcript Identifier AT1G05260.1
- Gene Type Coding gene
- Location Chr1 : 1529827-1531271 : positive
Gene Family Information
- ID HOM05D000039
- #Genes/#Species 4967/96
- Phylogenetic origin
- ID ORTHO05D000366
- #Genes/#Species 1052/93
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G05260.1
- symbol RCI3
- Alias RCI3A
- full_name RARE COLD INDUCIBLE GENE 3
- uniprot O23044
Descriptions
- Description Peroxidase superfamily protein
- Computational description RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042744 | IEA | GOA Database | hydrogen peroxide catabolic process | |
| GO:0042744 | IEA | InterPro | hydrogen peroxide catabolic process | |
| GO:0006979 | IEA | Gene Ontology | response to oxidative stress | |
| GO:0006979 | IEA | InterPro | response to oxidative stress | |
| GO:0098869 | IEA | GOA Database | cellular oxidant detoxification | |
| GO:0006950 | IBA | Gene Ontology | response to stress | 1 |
| GO:0042538 | IMP | Gene Ontology | hyperosmotic salinity response | 2 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 2 |
| GO:0009269 | IMP | Gene Ontology | response to desiccation | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004601 | IEA | GOA Database | peroxidase activity | |
| GO:0004601 | IDA IBA | Gene Ontology | peroxidase activity | 1 2 |
| GO:0004601 | IEA | InterPro | peroxidase activity | |
| GO:0020037 | IEA | Gene Ontology | heme binding | |
| GO:0020037 | IEA | InterPro | heme binding | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005576 | IEA | GOA Database | extracellular region | |
| GO:0005576 | ISM | Gene Ontology | extracellular region | |
| GO:0009506 | IBA | Gene Ontology | plasmodesma | 1 |
| GO:0009505 | IBA | Gene Ontology | plant-type cell wall | 1 |
| GO:0005783 | ISS | Gene Ontology | endoplasmic reticulum | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |