Gene: AT1G04990

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G04990
  • Transcript Identifier AT1G04990.2
  • Gene Type Coding gene
  • Location Chr1 : 1419368-1421454 : negative

Gene Family Information

  • ID HOM05D000568
  • #Genes/#Species 974/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G04990.2
  • uniprot Q94AD9

Descriptions

  • Description Zinc finger C-x8-C-x5-C-x3-H type family protein
  • Computational description Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 1789 Blast hits to 1100 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 576; Fungi - 244; Plants - 789; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).
  • Computational description Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 2 (TAIR:AT2G32930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004518
IEA
GOA Databasenuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036855 Zinc finger, CCCH-type superfamily
IPR000571 Zinc finger, CCCH-type
Mapman id Description
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF)