Gene: AT1G01340
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G01340
- Transcript Identifier AT1G01340.2
- Gene Type Coding gene
- Location Chr1 : 132414-135216 : negative
Gene Family Information
- ID HOM05D000122
- #Genes/#Species 2793/98
- Phylogenetic origin
- ID ORTHO05D000139
- #Genes/#Species 1726/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G01340.2
- symbol CNGC10
- Alias ACBK1,ATCNGC10,cyclic nucleotide gated channel 10
- uniprot Q9LNJ0
Descriptions
- Description cyclic nucleotide gated channel 10
- Computational description cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
- Computational description cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034220 | IEA | GOA Database | ion transmembrane transport | |
| GO:0006811 | IEA | GOA Database | ion transport | |
| GO:0006811 | IEA | InterPro | ion transport | |
| GO:0055085 | IEA | GOA Database | transmembrane transport | |
| GO:0055085 | IEA | InterPro | transmembrane transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005216 | IEA | Gene Ontology | ion channel activity | |
| GO:0005216 | IEA | InterPro | ion channel activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0030553 | IEA | GOA Database | cGMP binding | |
| GO:0030552 | IEA | GOA Database | cAMP binding | |
| GO:0005516 | IEA | GOA Database | calmodulin binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005739 | ISM | Gene Ontology | mitochondrion | |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 24.3.2.4 | Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC) |