Gene: AT1G01080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G01080
  • Transcript Identifier AT1G01080.3
  • Gene Type Coding gene
  • Location Chr1 : 45610-46789 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G01080.3
  • uniprot Q8W592

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G60000.1); Has 509067 Blast hits to 499893 proteins in 22124 species: Archae - 10819; Bacteria - 303967; Metazoa - 99035; Fungi - 14863; Plants - 31737; Viruses - 35534; Other Eukaryotes - 13112 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1901259
IBA
Gene Ontologychloroplast rRNA processing1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 2 3
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
HDA
ISM
Gene Ontologychloroplast4
GO:0009941
HDA
Gene Ontologychloroplast envelope5
GO:0005634
HDA
Gene Ontologynucleus6
GO:0009570
HDA
Gene Ontologychloroplast stroma7
GO:0009536
HDA
Gene Ontologyplastid8
GO:0009535
IBA
Gene Ontologychloroplast thylakoid membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated