Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
unitig_32.g10843 unitig_32 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr4.2055 chr4 - View
Actinidia chinensis Actinidia39904 Lachesis_group17 - View
Arabidopsis thaliana AT5G44120 RmlC-like cupins superfamily protein Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene%2C CRA2%2C which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 984 Blast hits to 960 proteins in 164 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 867%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). CRUCIFERINA (CRA1)%3B FUNCTIONS IN: nutrient reservoir activity%3B INVOLVED IN: response to abscisic acid stimulus%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: guard cell%2C seed%3B EXPRESSED DURING: seedling growth%2C seed development stages%3B CONTAINS InterPro DOMAIN/s: 11-S seed storage protein%2C conserved site (InterPro:IPR022379)%2C Cupin%2C RmlC-type (InterPro:IPR011051)%2C Cupin 1 (InterPro:IPR006045)%2C RmlC-like jelly roll fold (InterPro:IPR014710)%2C 11-S seed storage protein%2C plant (InterPro:IPR006044)%3B BEST Arabidopsis thaliana protein match is: cruciferin 2 (TAIR:AT1G03880.1)%3B Has 1047 Blast hits to 1009 proteins in 168 species: Archae - 0%3B Bacteria - 115%3B Metazoa - 2%3B Fungi - 0%3B Plants - 930%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr5 - View
Brassica napus A02p28230 A02 - View
Camellia sinensis var. sinensis CSS0013467 PREDICTED: legumin B-like [Nicotiana sylvestris] Chr5 + View
Capsicum annuum CAN.G638.58 PGAv.1.6.scaffold638 + View
Corylus avellana Haze_11382 Similar to 11S globulin (Juglans nigra OX%3D16719) 9 - View
Coffea canephora Cc03_g05570 Putative 11S globulin subunit beta chr3 - View
Carya illinoinensis CiPaw.01G184100 PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Chr01 + View
Citrullus lanatus ClCG06G007020 11S seed storage globulin B2 CG_Chr06 + View
Carica papaya Cpa.g.sc44.53 supercontig_44 - View
Chenopodium quinoa AUR62002139 FA18: 13S globulin seed storage protein 2 C_Quinoa_Scaffold_4480 - View
Cucumis sativus L. CsaV3_2G012740 11S seed storage globulin chr2 - View
Davidia involucrata Dinv29858 GWHABJS00000016 + View
Durio zibethinus Duzib151G0090 NW_019167904.1 - View
Erigeron canadensis ECA236G0417 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.H00153 Chr08 + View
Manihot esculenta Manes.15G041200 Chromosome15 + View
Manihot esculenta Manes.03G163900 Chromosome03 + View
Nelumbo nucifera Nn3g19658 chr3 + View
Nelumbo nucifera Nn1g02764 chr1 + View
Quercus lobata QL06p018087 6 - View
Striga asiatica SGA_v2.0_scaffold67G22742 scaffold67 + View
Sechium edule Sed0008213 LG05 + View
Sechium edule Sed0016838 LG09 - View
Solanum lycopersicum Solyc09g090150.4 Seed storage protein (AHRD V3.3 *** Q2TPW5_9ROSI) SL4.0ch09 - View
Solanum lycopersicum Solyc03g005580.2 Seed storage protein (AHRD V3.3 *** Q2TPW5_9ROSI) SL4.0ch03 - View
Solanum pennellii Sopen03g001580 Legumin B precursor (Beta-globulin B) (LEGB-C134) - Gossypium hirsutum (Upland cotton), Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | CRUCIFERINA (CRA1) | FUNCTIONS IN: nutrient reservoir activity | INVOLVED IN: response to abscisic acid stimulus | LOCATED IN: endomembrane system | EXPRESSED IN: guard cell, seed | EXPRESSED DURING: seedling growth, seed development stages | CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site , Cupin, RmlC-type , Cupin 1 , RmlC-like jelly roll fold , 11-S seed storage protein, plant | BEST Arabidopsis thaliana protein match is: cruciferin 2 Spenn-ch03 - View
Solanum pennellii Sopen09g033070 11S globulin subunit beta precursor | 11S globulin delta chain (11S globulin basic chain)) - Cucurbita maxima (Pumpkin) (Winter squash), Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | CRUCIFERINA (CRA1) | FUNCTIONS IN: nutrient reservoir activity | INVOLVED IN: response to abscisic acid stimulus | LOCATED IN: endomembrane system | EXPRESSED IN: guard cell, seed | EXPRESSED DURING: seedling growth, seed development stages | CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site , Cupin, RmlC-type , Cupin 1 , RmlC-like jelly roll fold , 11-S seed storage protein, plant | BEST Arabidopsis thaliana protein match is: cruciferin 2 Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400017169 11S globulin isoform 3 ST4.03ch09 - View
Theobroma cacao Thecc.04G255700 Legumin B Chromosome_4 - View
Tripterygium wilfordii TWI53G0520 NC_052244.1 + View
Tripterygium wilfordii TWI09G0507 NC_052245.1 + View