Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Acer truncatum | Atru.chr4.2045 | chr4 | - | View | |
Arabidopsis lyrata | AL3G37990 | scaffold_3 | + | View | |
Avicennia marina | MSTRG.21918 | ScioBoG_3008_HRSCAF_3015 | + | View | |
Amaranthus hybridus | Ah.11g049630 | AmaHy_arrow1_Scaffold_11 | - | View | |
Arabidopsis thaliana | AT3G23330 | Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1)%3B Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 50%3B Fungi - 109%3B Plants - 37267%3B Viruses - 0%3B Other Eukaryotes - 609 (source: NCBI BLink). | Chr3 | + | View |
Brassica carinata | BcaC05g27940 | ChrC05 | + | View | |
Brassica carinata | BcaC06g35509 | ChrC06 | + | View | |
Brassica napus | C07p14080 | C07 | - | View | |
Brassica napus | A07p09130 | A07 | - | View | |
Brassica napus | A05p25360 | A05 | + | View | |
Brassica napus | A01p32110 | A01 | + | View | |
Brassica oleracea | BolC7t41905H | C7 | - | View | |
Brassica rapa | BraA01t03336Z | A01 | + | View | |
Brassica rapa | BraA07t28707Z | A07 | - | View | |
Brassica rapa | BraA05t21421Z | A05 | + | View | |
Beta vulgaris | EL10Ac3g04993 | KOG3485 - Uncharacterized conserved protein | Chr3_EL10_PGA_scaffold7 | - | View |
Cannabis sativa | CANSAT78G1574 | NC_044376.1 | - | View | |
Corylus avellana | Haze_11397 | Similar to PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 (Arabidopsis thaliana OX%3D3702) | 9 | + | View |
Coffea canephora | Cc03_g05650 | Putative pentatricopeptide repeat-containing protein At3g23330 | chr3 | + | View |
Citrus clementina | Ciclev10006568m.g | scaffold_9 | + | View | |
Cardamine hirsuta | CARHR119050 | Pentatricopeptide repeat-containing protein | Chr4 | + | View |
Cardamine hirsuta | CARHR099300 | Pentatricopeptide repeat-containing protein | Chr3 | + | View |
Carya illinoinensis | CiPaw.01G183200 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | Chr01 | - | View |
Chenopodium quinoa | AUR62015556 | PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 | C_Quinoa_Scaffold_2751 | - | View |
Chenopodium quinoa | AUR62002148 | PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 | C_Quinoa_Scaffold_4480 | + | View |
Capsella rubella | Carub.0003s2358 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | scaffold_3 | + | View |
Erythranthe guttata | Migut.N00280 | scaffold_14 | + | View | |
Eutrema salsugineum | Thhalv10020184m.g | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | scaffold_13 | - | View |
Fragaria x ananassa | FAN17G2991 | PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) | Fvb4-2 | - | View |
Fragaria vesca | FvH4_4g03820 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Fvb4 | + | View |
Glycine max | Glyma.03G161200 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Gm03 | + | View |
Helianthus annuus | HanXRQChr03g0091551 | Putative tetratricopeptide-like helical domain | HanXRQChr03 | + | View |
Hydrangea macrophylla | Hma1.2p1_0267F.1_g107210 | Hma1.2p1_0267F.1 | - | View | |
Lupinus albus | Lalb_Chr01g0019561 | K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) | Lalb_Chr01 | - | View |
Lotus japonicus | Lj1g0010012 | K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] (BARD1) | chr1 | - | View |
Lonicera japonica | Lj2C1154T14 | GWHAAZE00000002 | + | View | |
Lonicera japonica | Lj3A692T59 | GWHAAZE00000003 | - | View | |
Magnolia biondii | MBI07_g16896_MAGBIO | AED:0.01 | Chr07 | + | View |
Magnolia biondii | MBI04_g10915_MAGBIO | AED:0.33 | Chr04 | - | View |
Malus domestica | MD13G1215400 | Tetratricopeptide repeat (TPR)-like superfamily protein | Chr13 | + | View |
Malus domestica | MD10G1243200 | Pentatricopeptide repeat (PPR) superfamily protein | Chr10 | - | View |
Manihot esculenta | Manes.15G041900 | Chromosome15 | + | View | |
Nelumbo nucifera | Nn3g19691 | chr3 | + | View | |
Nelumbo nucifera | Nn1g02829 | chr1 | + | View | |
Nicotiana tabacum | Nitab4.5_0000044g0400 | Tetratricopeptide-like helical, Pentatricopeptide repeat | Nitab4.5_0000044 | + | View |
Punica granatum | PGR004G1555 | NC_045131.1 | - | View | |
Punica granatum | PGR031G1198 | NC_045127.1 | + | View | |
Prunus persica | Prupe.1G040600 | PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) | Pp01 | + | View |
Phaseolus vulgaris | Phvul.001G159100 | PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) | Chr01 | + | View |
Rosa chinensis | RcHm_v2.0_Chr4g0393661 | RcHm_v2.0_Chr4 | + | View | |
Rhododendron simsii | Rhsim04G0179400 | chr04 | - | View | |
Striga asiatica | SGA_v2.0_scaffold138G35197 | scaffold138 | - | View | |
Simmondsia chinensis | Sc25g0003720 | GWHAASQ00000025 | - | View | |
Solanum lycopersicum | Solyc09g090220.3 | Pentatricopeptide repeat (AHRD V3.3 *** A0A200QEC4_9MAGN) | SL4.0ch09 | + | View |
Solanum pennellii | Sopen09g027850 | Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | breast cancer associated RING 1 (BARD1) | FUNCTIONS IN: transcription coactivator activity, DNA binding | INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development | LOCATED IN: intracellular | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, PHD-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 | Spenn-ch09 | - | View |
Solanum pennellii | Sopen09g033130 | Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 | Spenn-ch09 | + | View |
Solanum tuberosum | PGSC0003DMG400017219 | Pentatricopeptide repeat-containing protein | ST4.03ch09 | + | View |
Trochodendron aralioides | TAR362G1132 | group17 | + | View | |
Tarenaya hassleriana | THA.LOC104808631 | putative pentatricopeptide repeat-containing protein At3g23330 | NW_010964923.1 | + | View |
Tripterygium wilfordii | TWI09G1242 | NC_052245.1 | - | View | |
Vaccinium macrocarpon | vmacro08499 | Similar to PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 (Arabidopsis thaliana OX%3D3702) | chr6_Vaccinium_macrocarpon_Stevens_v1 | - | View |
Vaccinium macrocarpon | vmacro14807 | Similar to BARD1: BRCA1-associated RING domain protein 1 (Arabidopsis thaliana OX%3D3702) | chr7_Vaccinium_macrocarpon_Stevens_v1 | - | View |
Vaccinium macrocarpon | vmacro15347 | Similar to LOI1: Pentatricopeptide repeat-containing protein At4g14850 (Arabidopsis thaliana OX%3D3702) | chr4_Vaccinium_macrocarpon_Stevens_v1 | + | View |
Vitis vinifera | GSVIVG01027839001 | chr5 | + | View | |
Zea mays | Zm00001eb061240 | Zm00001e006036 Pentatricopeptide repeat-containing protein | 1 | + | View |
Zea mays | Zm00001eb135310 | Zm00001e124901 Pentatricopeptide repeat-containing protein | 3 | - | View |