Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g031440 RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (Fragment) - Brassica napus (Rape), Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. | chaperonin-60alpha (CPN60A) | FUNCTIONS IN: ATP binding | INVOLVED IN: protein folding, chloroplast organization, embryo development | LOCATED IN: in 8 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 , Chaperonin Cpn60, conserved site , Chaperonin Cpn60 | BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein Spenn-ch06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G8110 LG-5 - View
Acer truncatum Atru.chr3.3570 chr3 - View
Arabidopsis lyrata AL4G22200 scaffold_4 - View
Avicennia marina MSTRG.18680 ScioBoG_22153_HRSCAF_22259 + View
Avicennia marina MSTRG.17783 ScioBoG_19834_HRSCAF_19925 - View
Aquilegia oxysepala Aqoxy1G01179 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZT6WDH PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F84KR8 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT2G28000 chaperonin-60alpha Encodes chaperonin-60 alpha%2C a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. chaperonin-60alpha (CPN60A)%3B FUNCTIONS IN: ATP binding%3B INVOLVED IN: protein folding%2C chloroplast organization%2C embryo development%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423)%2C Chaperonin Cpn60%2C conserved site (InterPro:IPR018370)%2C Chaperonin Cpn60 (InterPro:IPR001844)%3B BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1)%3B Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792%3B Bacteria - 21835%3B Metazoa - 1656%3B Fungi - 1573%3B Plants - 797%3B Viruses - 2%3B Other Eukaryotes - 7241 (source: NCBI BLink). Chr2 + View
Brassica napus A04p21270 A04 + View
Brassica napus C04p23530 C04 - View
Brassica oleracea BolC4t23857H C4 - View
Brassica rapa BraA07t29567Z A07 + View
Brassica rapa BraA04t17694Z A04 + View
Camellia sinensis var. sinensis CSS0040491 rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] Chr13 + View
Capsicum annuum CAN.G309.20 PGAv.1.6.scaffold309 - View
Corylus avellana Haze_23766 Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Pisum sativum OX%3D3888) 6 - View
Coffea canephora Cc01_g10720 RuBisCO large subunit-binding protein subunit alpha, chloroplastic chr1 - View
Citrus clementina Ciclev10028085m.g scaffold_8 - View
Carya illinoinensis CiPaw.14G085900 PTHR11353//PTHR11353:SF11 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Chr14 + View
Cucumis melo MELO3C026919.2 RuBisCO large subunit-binding protein subunit alpha, chloroplastic chr11 + View
Carica papaya Cpa.g.sc65.23 supercontig_65 + View
Cucumis sativus L. CsaV3_6G014140 60 kDa chaperonin chr6 + View
Daucus carota DCAR_015518 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv29346 GWHABJS00000007 - View
Davidia involucrata Dinv32697 GWHABJS00000010 - View
Durio zibethinus Duzib150G0548 NW_019167882.1 - View
Durio zibethinus Duzib168G1201 NW_019168159.1 + View
Erigeron canadensis ECA238G1078 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA248G3228 Conyza_canadensis_scaffold:9 + View
Erythranthe guttata Migut.D02255 scaffold_4 + View
Fragaria x ananassa FAN11G2874 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Fvb3-4 + View
Fragaria x ananassa FAN25G1870 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Fvb3-1 + View
Fragaria x ananassa FAN16G1761 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Fvb3-3 - View
Fragaria vesca FvH4_3g31450 PTHR11353//PTHR11353:SF11 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Fvb3 - View
Gossypium hirsutum Gohir.A13G232000 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC A13 + View
Gossypium hirsutum Gohir.D13G237600 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC D13 + View
Gossypium hirsutum Gohir.D05G105900 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC D05 + View
Glycine max Glyma.12G078100 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Gm12 + View
Glycine max Glyma.11G195900 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Gm11 - View
Gossypium raimondii Gorai.013G268400 Chr13 + View
Gossypium raimondii Gorai.009G109900 Chr09 + View
Helianthus annuus HanXRQChr01g0019141 Probable chaperonin-60alpha HanXRQChr01 - View
Helianthus annuus HanXRQChr09g0259321 Probable ruBisCO large subunit-binding protein subunit alpha, chloroplastic HanXRQChr09 + View
Lupinus albus Lalb_Chr19g0137081 PTHR11353//PTHR11353:SF11 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Lalb_Chr19 - View
Lupinus albus Lalb_Chr01g0004471 PTHR11353//PTHR11353:SF11 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Lalb_Chr01 + View
Lotus japonicus Lj3g0018755 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC chr3 + View
Lonicera japonica Lj2A1017T37 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_1_63701 Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_2_99661 KOG0356 - Mitochondrial chaperonin, Cpn60/Hsp60p Lsat_1_v8_lg_2 - View
Malus domestica MD11G1141000 chaperonin-60alpha Chr11 + View
Malus domestica MD03G1124000 chaperonin-60alpha Chr03 + View
Manihot esculenta Manes.11G149300 Chromosome11 + View
Medicago truncatula Medtr4g057970 ruBisCO large subunit-binding protein protein chr4 - View
Nelumbo nucifera Nn2g13753 chr2 + View
Nelumbo nucifera Nn2g11550 chr2 + View
Nicotiana tabacum Nitab4.5_0000106g0330 Chaperonin Cpn60, GroEL-like equatorial domain, Chaperonin Cpn60, conserved site, GroEL-like apical domain, Chaperonin Cpn60/TCP-1 Nitab4.5_0000106 + View
Nicotiana tabacum Nitab4.5_0004126g0010 Chaperonin Cpn60, GroEL-like apical domain, GroEL-like equatorial domain, Chaperonin Cpn60/TCP-1, Chaperonin Cpn60, conserved site Nitab4.5_0004126 - View
Petunia axillaris Peaxi162Scf00115g01117 RuBisCO large subunit-binding protein subunit alpha Peaxi162Scf00115 - View
Punica granatum PGR102G2345 NC_045129.1 + View
Prunus persica Prupe.6G106800 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Pp06 + View
Papaver somniferum PSO339G1169 NC_039366.1 + View
Populus trichocarpa Potri.009G009300 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Chr09 - View
Populus trichocarpa Potri.004G213400 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Chr04 + View
Phaseolus vulgaris Phvul.011G082600 PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Chr11 + View
Quercus lobata QL01p020874 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0058151 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim01G0213300 chr01 - View
Striga asiatica SGA_v2.0_scaffold180G39618 scaffold180 - View
Striga asiatica SGA_v2.0_scaffold263G45996 scaffold263 - View
Salvia bowleyana SalBow3G3740 GWHASIU00000006 + View
Salix brachista Sabra09G0005500 GWHAAZH00000009 - View
Salix brachista Sabra04G0144500 GWHAAZH00000004 + View
Solanum lycopersicum Solyc11g069790.2 60 kDa chaperonin (AHRD V3.3 *** B2IXD2_NOSP7) SL4.0ch11 - View
Solanum lycopersicum Solyc06g075010.4 60 kDa chaperonin (AHRD V3.3 *** B2IXD2_NOSP7) SL4.0ch06 - View
Solanum tuberosum PGSC0003DMG400001148 RuBisCO large subunit-binding protein subunit alpha, chloroplastic ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400011997 CPN60A ST4.03ch06 - View
Trochodendron aralioides TAR636G3112 group1 + View
Trochodendron aralioides TAR623G0135 group7 + View
Theobroma cacao Thecc.09G346600 RuBisCO large subunit-binding protein subunit alpha Chromosome_9 + View
Tarenaya hassleriana THA.LOC104800590 ruBisCO large subunit-binding protein subunit alpha%2C chloroplastic NW_010969548.1 - View
Trifolium pratense TPR.G6168 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI75G0975 NC_052253.1 + View
Tripterygium wilfordii TWI79G0720 NC_052238.1 + View
Vaccinium macrocarpon vmacro14414 Similar to RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Pisum sativum OX%3D3888) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G1473 CM024076.1 + View
Vitis vinifera GSVIVG01031526001 chr6 + View