Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen09g002570 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type , Zinc finger, RING-CH-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch09 - View
Sopen06g005790 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type , Zinc finger, RING-CH-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G12560 LG-1 + View
Aethionema arabicum Aa31LG4G14550 LG-4 - View
Acer truncatum Atru.chr3.3637 chr3 - View
Acer truncatum Atru.chr8.1877 chr8 + View
Actinidia chinensis Actinidia07133 Lachesis_group13 + View
Arabidopsis lyrata AL8G37170 scaffold_8 + View
Avicennia marina MSTRG.17808 ScioBoG_19834_HRSCAF_19925 - View
Avicennia marina MSTRG.18656 ScioBoG_22153_HRSCAF_22259 + View
Avicennia marina MSTRG.21128 ScioBoG_26769_HRSCAF_26899 - View
Amaranthus hybridus Ah.01g002850 AmaHy_arrow1_Scaffold_1 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.VIK0YT PTHR23012//PTHR23012:SF98 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.0990KC PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.47SX7B PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H8QW84 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.IW12TT PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT5G60580 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1)%3B Has 1587 Blast hits to 1239 proteins in 158 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 421%3B Fungi - 112%3B Plants - 632%3B Viruses - 18%3B Other Eukaryotes - 394 (source: NCBI BLink). RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%2C Zinc finger%2C RING-CH-type (InterPro:IPR011016)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09760.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0115G007 AmTr_v1.0_scaffold00175 + View
Brassica carinata BcaC03g13958 ChrC03 - View
Brassica carinata BcaC04g19716 ChrC04 + View
Brassica carinata BcaB08g36353 ChrB08 + View
Brassica carinata BcaB05g22655 ChrB05 + View
Brassica napus C02p11580 C02 - View
Brassica napus C09p53220 C09 + View
Brassica napus BNapus_Darmor_BZH_scaffold_38p00020 BNapus_Darmor_BZH_scaffold_38 + View
Brassica napus A10p17770 A10 + View
Brassica oleracea BolC9t58197H C9 + View
Brassica oleracea BolC2t07244H C2 - View
Brassica rapa BraA02t05715Z A02 - View
Brassica rapa BraA10t43854Z A10 + View
Beta vulgaris EL10Ac9g22506 PTHR23012//PTHR23012:SF81 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0049615 hypothetical protein VITISV_024209 [Vitis vinifera] Chr13 + View
Camellia sinensis var. sinensis CSS0007627 hypothetical protein VITISV_005071 [Vitis vinifera] Chr4 + View
Camellia sinensis var. sinensis CSS0024836 PREDICTED: uncharacterized protein LOC105170709 [Sesamum indicum] Chr11 - View
Capsicum annuum CAN.G631.21 PGAv.1.6.scaffold631 + View
Cannabis sativa CANSAT54G2392 NC_044375.1 + View
Cicer arietinum L. Ca_01418_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_05254_v3 Ca_LG2_v3 + View
Corylus avellana Haze_23840 Protein of unknown function 6 - View
Coffea canephora Cc06_g03850 RING/U-box superfamily protein chr6 - View
Coffea canephora Cc01_g11190 RING/U-box superfamily protein chr1 - View
Citrus clementina Ciclev10011512m.g scaffold_6 + View
Citrus clementina Ciclev10028219m.g scaffold_8 - View
Carpinus fangiana Cfa011323 Cfa04 - View
Cardamine hirsuta CARHR274240 RING/FYVE/PHD zinc finger superfamily protein Chr8 + View
Carya illinoinensis CiPaw.14G080200 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr14 + View
Carya illinoinensis CiPaw.13G112400 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr13 + View
Citrullus lanatus ClCG02G021130 RING/U-box superfamily protein LENGTH=494 CG_Chr02 + View
Citrullus lanatus ClCG10G020370 RING/U-box superfamily protein LENGTH=494 CG_Chr10 + View
Citrullus lanatus ClCG03G002200 RING/U-box superfamily protein LENGTH=494 CG_Chr03 - View
Cucumis melo MELO3C005058.2 RING/U-box protein chr12 - View
Cucumis melo MELO3C009333.2 Zinc finger protein chr04 + View
Cucumis melo MELO3C025770.2 RING/U-box protein chr11 + View
Carica papaya Cpa.g.sc216.15 supercontig_216 - View
Chenopodium quinoa AUR62039629 Protein of unknown function C_Quinoa_Scaffold_3093 + View
Chenopodium quinoa AUR62024991 Protein of unknown function C_Quinoa_Scaffold_4082 - View
Capsella rubella Carub.0008s2126 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN scaffold_8 + View
Cucumis sativus L. CsaV3_6G013890 RING/U-box protein chr6 + View
Cucumis sativus L. CsaV3_1G012850 RING/U-box protein chr1 - View
Daucus carota DCAR_022737 hypothetical protein DCARv2_Chr6 - View
Daucus carota DCAR_018814 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv37278 GWHABJS00000021 + View
Davidia involucrata Dinv32754 GWHABJS00000010 - View
Durio zibethinus Duzib093G1740 NW_019167937.1 + View
Durio zibethinus Duzib170G0641 NW_019167871.1 + View
Durio zibethinus Duzib168G0625 NW_019168159.1 - View
Erigeron canadensis ECA233G5857 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA238G3013 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.B02493 Chr02 + View
Eucalyptus grandis Eucgr.J00933 Chr10 - View
Erythranthe guttata Migut.D02218 scaffold_4 + View
Erythranthe guttata Migut.J00554 scaffold_10 + View
Eutrema salsugineum Thhalv10013381m.g PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN scaffold_2 - View
Fragaria x ananassa FAN11G1310 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb3-4 + View
Fragaria x ananassa FAN05G0027 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb6-3 + View
Fragaria x ananassa FAN16G0176 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb3-3 - View
Fragaria x ananassa FAN25G1476 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb3-1 + View
Fragaria x ananassa FAN21G1580 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb3-2 - View
Fragaria vesca FvH4_3g32510 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Fvb3 - View
Gossypium hirsutum Gohir.D01G204400 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED D01 + View
Gossypium hirsutum Gohir.A01G215600 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED A01 + View
Gossypium hirsutum Gohir.A05G102400 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.D03G134000 PTHR23012//PTHR23012:SF81 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED D03 + View
Gossypium hirsutum Gohir.D05G102100 PTHR23012//PTHR23012:SF79//PTHR23012:SF81 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED // SUBFAMILY NOT NAMED D05 + View
Glycine max Glyma.12G173300 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm12 - View
Glycine max Glyma.11G147100 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm11 - View
Glycine max Glyma.12G068000 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm12 - View
Glycine max Glyma.03G180200 PTHR23012//PTHR23012:SF98 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Gm03 - View
Glycine max Glyma.13G326500 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN Gm13 - View
Gossypium raimondii Gorai.009G106300 Chr09 + View
Gossypium raimondii Gorai.002G248600 Chr02 + View
Helianthus annuus HanXRQChr02g0055771 Probable RING/U-box superfamily protein HanXRQChr02 + View
Helianthus annuus HanXRQChr13g0403501 Putative zinc finger, RING-CH-type; Zinc finger, RING/FYVE/PHD-type HanXRQChr13 + View
Helianthus annuus HanXRQChr14g0452891 Uncharacterized protein, partly conserved in plant genome(s), partly supported by expression data HanXRQChr14 - View
Hydrangea macrophylla Hma1.2p1_1031F.1_g250000 Hma1.2p1_1031F.1 + View
Lupinus albus Lalb_Chr01g0018891 PTHR23012//PTHR23012:SF98 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Lalb_Chr01 + View
Lupinus albus Lalb_Chr03g0027301 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr03 + View
Lupinus albus Lalb_Chr24g0394591 PTHR23012//PTHR23012:SF81 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Lalb_Chr24 + View
Lupinus albus Lalb_Chr19g0137321 PTHR23012//PTHR23012:SF25 - MEMBRANE ASSOCIATED RING FINGER // RING/U-BOX DOMAIN-CONTAINING PROTEIN Lalb_Chr19 - View
Lotus japonicus Lj3g0010603 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN chr3 - View
Lotus japonicus Lj3g0023136 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN chr3 + View
Lonicera japonica Lj2C1029T9 GWHAAZE00000002 - View
Lonicera japonica Lj1C191G1 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_1_65381 Lsat_1_v8_lg_1 - View
Lactuca sativa Lsat_1_v5_gn_6_46001 Lsat_1_v8_lg_6 - View
Lactuca sativa Lsat_1_v5_gn_2_98320 Lsat_1_v8_lg_2 - View
Magnolia biondii MBI10_g06417_MAGBIO AED:0.19 Chr10 - View
Malus domestica MD03G1116800 RING/U-box superfamily protein Chr03 + View
Malus domestica MD11G1134800 RING/U-box superfamily protein Chr11 + View
Malus domestica MD12G1119900 RING/U-box superfamily protein Chr12 + View
Malus domestica MD04G1099800 RING/U-box superfamily protein Chr04 + View
Manihot esculenta Manes.08G006100 Chromosome08 - View
Manihot esculenta Manes.11G144500 Chromosome11 + View
Manihot esculenta Manes.04G021800 Chromosome04 - View
Medicago truncatula Medtr4g459440 RING/U-box protein, putative chr4 - View
Medicago truncatula Medtr2g094130 RING/U-box protein chr2 + View
Nelumbo nucifera Nn2g10778 chr2 + View
Nicotiana tabacum Nitab4.5_0003701g0020 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0003701 - View
Nicotiana tabacum Nitab4.5_0000650g0200 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000650 + View
Nicotiana tabacum Nitab4.5_0000181g0080 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0000181 + View
Nicotiana tabacum Nitab4.5_0000101g0050 Zinc finger, RING/FYVE/PHD-type, Zinc finger, RING-CH-type Nitab4.5_0000101 - View
Olea europaea Oeu001265.1 scaffold1031 + View
Olea europaea Oeu030178.1 chr4 + View
Petunia axillaris Peaxi162Scf00270g00822 RING/U-box superfamily protein Peaxi162Scf00270 - View
Punica granatum PGR119G0979 NC_045132.1 - View
Prunus persica Prupe.6G100700 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Pp06 + View
Pisum sativum Psat7g224800 RING-variant domain chr7LG7 - View
Pisum sativum Psat5g278200 RING-variant domain chr5LG3 + View
Papaver somniferum PSO339G5119 NC_039366.1 - View
Papaver somniferum PSO384G0883 NC_039368.1 + View
Papaver somniferum PSO063G0287 NC_039364.1 + View
Papaver somniferum PSO339G4144 NC_039366.1 - View
Populus trichocarpa Potri.009G013300 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Chr09 + View
Populus trichocarpa Potri.006G129000 PTHR23012//PTHR23012:SF79 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Chr06 + View
Phaseolus vulgaris Phvul.005G135900 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr05 - View
Phaseolus vulgaris Phvul.011G078700 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Chr11 + View
Quercus lobata QL01p022338 1 - View
Quercus lobata QL07p044656 7 + View
Rosa chinensis RcHm_v2.0_Chr5g0059571 RcHm_v2.0_Chr5 - View
Rosa chinensis RcHm_v2.0_Chr3g0469421 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim13G0094000 chr13 + View
Rhododendron simsii Rhsim05G0182200 chr05 + View
Striga asiatica SGA_v2.0_scaffold75G24868 scaffold75 + View
Striga asiatica SGA_v2.0_scaffold97G29225 scaffold97 + View
Salvia bowleyana SalBow3G2354 GWHASIU00000006 + View
Salvia bowleyana SalBow3G4423 GWHASIU00000006 - View
Salix brachista Sabra06G0101500 GWHAAZH00000006 + View
Simmondsia chinensis Sc06g0010090 GWHAASQ00000006 + View
Sechium edule Sed0011267 LG05 - View
Sechium edule Sed0022909 LG01 + View
Sechium edule Sed0013815 LG04 - View
Solanum lycopersicum Solyc09g007680.4 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type (AHRD V3.3 *** A0A2U1LSH5_ARTAN) SL4.0ch09 - View
Solanum lycopersicum Solyc11g069350.2 Zinc finger, RING-CH-type, Zinc finger, RING/FYVE/PHD-type (AHRD V3.3 *** A0A2U1QK69_ARTAN) SL4.0ch11 + View
Schrenkiella parvula Sp6g22150 PTHR23012:SF25 - RING/U-BOX DOMAIN-CONTAINING PROTEIN ch6-6 + View
Solanum tuberosum PGSC0003DMG400008105 Zinc finger family protein ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400029165 Zinc finger family protein ST4.03ch06 + View
Trochodendron aralioides TAR633G2057 group2 - View
Trochodendron aralioides TAR623G1263 group7 - View
Theobroma cacao Thecc.09G339800 RING/U-box superfamily protein Chromosome_9 + View
Tarenaya hassleriana THA.LOC104810853 uncharacterized protein LOC104810853 NW_010965304.1 + View
Trifolium pratense TPR.G15530 Tp57577_TGAC_v2_LG4 - View
Trifolium pratense TPR.G11575 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI31G0053 NC_052233.1 + View
Tripterygium wilfordii TWI74G1408 NC_052234.1 + View
Tripterygium wilfordii TWI79G1047 NC_052238.1 + View
Vaccinium macrocarpon vmacro03195 Protein of unknown function chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G2174 CM024076.1 + View
Vigna mungo VMungo1080G1600 CM024079.1 + View
Vitis vinifera GSVIVG01025673001 chr8 + View
Vitis vinifera GSVIVG01025179001 chr6 - View