Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen10g033110 U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. | U2AF35B | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | INVOLVED IN: photoperiodism, flowering | LOCATED IN: nucleus | EXPRESSED IN: 28 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type , RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , U2 auxiliary factor small subunit | BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit, putative Spenn-ch10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G14300 LG-4 + View
Acer truncatum Atru.chr8.1642 chr8 - View
Arabidopsis lyrata AL5G23130 scaffold_5 - View
Avicennia marina MSTRG.12353 ScioBoG_17730_HRSCAF_17811 + View
Avicennia marina MSTRG.5805 ScioBoG_102839_HRSCAF_103093 + View
Amaranthus hybridus Ah.08g210990 AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy1G00953 CHR01 - View
Aquilegia oxysepala Aqoxy2G01428 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.07Q55L K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PQW11P K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) arahy.Tifrunner.gnm1.Arahy.13 - View
Arabidopsis thaliana AT3G44785 Zinc finger C-x8-C-x5-C-x3-H type family protein Zinc finger C-x8-C-x5-C-x3-H type family protein%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C CCCH-type (InterPro:IPR000571)%2C U2 auxiliary factor small subunit (InterPro:IPR009145)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxiliary factor small subunit%2C putative (TAIR:AT1G27650.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr3 - View
Amborella trichopoda ATR0820G024 AmTr_v1.0_scaffold00040 - View
Beta vulgaris EL10Ac7g16999 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr7_EL10_PGA_scaffold5 - View
Beta vulgaris EL10Ac9g21070 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0023799 Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1 [Theobroma cacao] Chr13 + View
Capsicum annuum CAN.G644.36 PGAv.1.6.scaffold644 - View
Cannabis sativa CANSAT54G1527 NC_044375.1 - View
Cicer arietinum L. Ca_08964_v3 Ca_LG3_v3 + View
Cicer arietinum L. Ca_01683_v3 Ca_LG1_v3 - View
Corylus avellana Haze_23457 Similar to U2AF35A: Splicing factor U2af small subunit A (Oryza sativa subsp. japonica OX%3D39947) 6 - View
Corylus avellana Haze_19530 Similar to U2AF35B: Splicing factor U2af small subunit B (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc01_g09880 Splicing factor U2af small subunit A chr1 - View
Coffea canephora Cc06_g05160 Splicing factor U2af small subunit A chr6 + View
Citrus clementina Ciclev10012216m.g scaffold_6 - View
Citrus clementina Ciclev10029043m.g scaffold_8 - View
Ceratophyllum demersum CDE02G4746 1 - View
Carpinus fangiana Cfa010086 Cfa04 - View
Cardamine hirsuta CARHR151340 Splicing factor U2af 38 kDa subunit Chr5 + View
Carya illinoinensis CiPaw.09G008100 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr09 + View
Carya illinoinensis CiPaw.13G141300 PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED Chr13 - View
Carya illinoinensis CiPaw.10G004900 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr10 + View
Citrullus lanatus ClCG01G012750 Splicing factor U2af 38 kDa subunit CG_Chr01 - View
Citrullus lanatus ClCG04G009760 Splicing factor U2af 38 kDa subunit CG_Chr04 + View
Cucumis melo MELO3C024515.2 splicing factor U2af small subunit B-like chr08 - View
Cucumis melo MELO3C004799.2 splicing factor U2af small subunit B-like chr12 + View
Carica papaya Cpa.g.sc47.49 supercontig_47 - View
Chenopodium quinoa AUR62023944 U2AF35A: Splicing factor U2af small subunit A C_Quinoa_Scaffold_3389 - View
Chenopodium quinoa AUR62038295 U2AF35A: Splicing factor U2af small subunit A C_Quinoa_Scaffold_2169 + View
Chenopodium quinoa AUR62033586 U2AF35B: Splicing factor U2af small subunit B C_Quinoa_Scaffold_1776 - View
Capsella rubella Carub.0005s1050 scaffold_5 - View
Cucumis sativus L. CsaV3_6G040400 splicing factor U2af small subunit B-like chr6 + View
Daucus carota DCAR_015481 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv29420 GWHABJS00000007 - View
Davidia involucrata Dinv19822 GWHABJS00000015 + View
Davidia involucrata Dinv21264 GWHABJS00000021 - View
Durio zibethinus Duzib170G0329 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons NW_019167871.1 - View
Erigeron canadensis ECA248G2699 Conyza_canadensis_scaffold:9 + View
Eucalyptus grandis Eucgr.B03897 Chr02 - View
Erythranthe guttata Migut.L01751 scaffold_12 + View
Erythranthe guttata Migut.N02517 scaffold_14 - View
Eutrema salsugineum Thhalv10002611m.g K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) scaffold_4 + View
Fragaria x ananassa FAN11G2227 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb3-4 + View
Fragaria x ananassa FAN16G0634 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb3-3 - View
Fragaria x ananassa FAN05G3396 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb6-3 - View
Fragaria x ananassa FAN09G2644 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb6-2 - View
Fragaria x ananassa FAN14G3478 PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED Fvb6-1 + View
Fragaria vesca FvH4_6g17780 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb6 + View
Fragaria vesca FvH4_3g29970 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Fvb3 - View
Gossypium hirsutum Gohir.A09G092500 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) A09 + View
Gossypium hirsutum Gohir.D09G092600 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) D09 + View
Gossypium hirsutum Gohir.D07G110950 PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED D07 + View
Glycine max Glyma.19G191100 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Gm19 + View
Glycine max Glyma.12G181300 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Gm12 + View
Glycine max Glyma.03G190600 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Gm03 + View
Gossypium raimondii Gorai.001G119200 Chr01 + View
Gossypium raimondii Gorai.006G109200 Chr06 + View
Helianthus annuus HanXRQChr02g0055021 Probable splicing factor U2af small subunit A HanXRQChr02 - View
Lupinus albus Lalb_Chr01g0004731 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Lalb_Chr01 + View
Lupinus albus Lalb_Chr22g0350601 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Lalb_Chr22 + View
Lupinus albus Lalb_Chr20g0112211 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Lalb_Chr20 - View
Lotus japonicus Lj3g0004634 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) chr3 - View
Lotus japonicus Lj3g0023331 PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED chr3 + View
Lotus japonicus Lj1g0014738 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) chr1 - View
Lonicera japonica Lj1A220T23 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_6_42581 Lsat_1_v8_lg_6 - View
Magnolia biondii MBI17_g30588_MAGBIO AED:0.27 Chr17 - View
Malus domestica MD12G1016800 Zinc finger C-x8-C-x5-C-x3-H type family protein Chr12 + View
Malus domestica MD03G1134000 U2 snRNP auxiliary factor small subunit Chr03 + View
Malus domestica MD11G1156400 Zinc finger C-x8-C-x5-C-x3-H type family protein Chr11 + View
Malus domestica MD14G1014800 Zinc finger C-x8-C-x5-C-x3-H type family protein Chr14 + View
Manihot esculenta Manes.11G156300 Chromosome11 + View
Manihot esculenta Manes.09G060572 Chromosome09 - View
Manihot esculenta Manes.08G020350 Chromosome08 + View
Medicago truncatula Medtr2g084715 splicing factor U2af small subunit A-like protein chr2 + View
Medicago truncatula Medtr7g103630 splicing factor U2af small subunit A-like protein chr7 + View
Nelumbo nucifera Nn6g35063 chr6 - View
Nicotiana tabacum Nitab4.5_0001453g0100 Zinc finger, CCCH-type, RNA recognition motif domain, U2 auxiliary factor small subunit, RNA recognition motif domain, eukaryote, Nucleotide-binding, alpha-beta plait Nitab4.5_0001453 - View
Nicotiana tabacum Nitab4.5_0007303g0020 Zinc finger, CCCH-type, RNA recognition motif domain, U2 auxiliary factor small subunit, Nucleotide-binding, alpha-beta plait, RNA recognition motif domain, eukaryote Nitab4.5_0007303 + View
Olea europaea Oeu050175.1 chr16 + View
Olea europaea Oeu008378.1 chr1 + View
Petunia axillaris Peaxi162Scf00789g00529 Splicing factor U2AF 35 kDa subunit Peaxi162Scf00789 + View
Prunus persica Prupe.6G118600 Pp06 + View
Prunus persica Prupe.7G118600 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Pp07 - View
Pisum sativum Psat5g254280 U2 auxiliary factor small subunit signature chr5LG3 - View
Papaver somniferum PSO339G6198 NC_039366.1 + View
Papaver somniferum PSO384G1979 NC_039368.1 - View
Papaver somniferum PSO063G4017 NC_039364.1 + View
Populus trichocarpa Potri.004G188900 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr04 - View
Populus trichocarpa Potri.009G149600 PTHR12620//PTHR12620:SF16 - U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT // SUBFAMILY NOT NAMED Chr09 - View
Populus trichocarpa Potri.006G116700 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr06 - View
Phaseolus vulgaris Phvul.001G186200 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr01 + View
Phaseolus vulgaris Phvul.005G127700 K12836 - splicing factor U2AF 35 kDa subunit (U2AF1) Chr05 - View
Quercus lobata QL07p040666 7 - View
Rosa chinensis RcHm_v2.0_Chr5g0055381 RcHm_v2.0_Chr5 - View
Rosa chinensis RcHm_v2.0_Chr3g0472021 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim01G0208800 chr01 - View
Rhododendron simsii Rhsim03G0081800 chr03 - View
Striga asiatica SGA_v2.0_scaffold93G28367 scaffold93 - View
Striga asiatica SGA_v2.0_scaffold40G15412 scaffold40 - View
Salvia bowleyana SalBow3G0056 GWHASIU00000006 - View
Salix brachista Sabra04G0129200 GWHAAZH00000004 + View
Salix brachista Sabra06G0091000 GWHAAZH00000006 - View
Simmondsia chinensis Sc02g0001160 GWHAASQ00000002 - View
Simmondsia chinensis Sc21g0004680 GWHAASQ00000021 + View
Simmondsia chinensis Sc12g0004120 GWHAASQ00000012 + View
Sechium edule Sed0026827 LG03 + View
Sechium edule Sed0021626 LG10 + View
Sechium edule Sed0008858 LG14 - View
Solanum lycopersicum Solyc11g066830.2 Zinc finger transcription factor 68 SL4.0ch11 + View
Solanum lycopersicum Solyc10g083640.2 Zinc finger transcription factor 64 SL4.0ch10 - View
Solanum tuberosum PGSC0003DMG400026524 Splicing factor U2af small subunit A ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400028265 U2 snrnp auxiliary factor, small subunit ST4.03ch10 + View
Selenicereus undatus Hund00792 Scaffold_33678 - View
Trochodendron aralioides TAR633G0835 group2 - View
Trochodendron aralioides TAR623G1115 group7 - View
Trochodendron aralioides TAR636G0528 group1 + View
Theobroma cacao Thecc.09G292400 Zinc finger C-x8-C-x5-C-x3-H type family protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104810898 splicing factor U2af small subunit B-like NW_010965304.1 + View
Trifolium pratense TPR.G32393 Tp57577_TGAC_v2_scaf_195 + View
Tripterygium wilfordii TWI75G0350 NC_052253.1 + View
Tripterygium wilfordii TWI74G1116 NC_052234.1 + View
Utricularia gibba unitig_22.g6647 unitig_22 - View
Utricularia gibba unitig_747.g21964 unitig_747 - View
Utricularia gibba unitig_0.g1493 unitig_0 - View
Vaccinium macrocarpon vmacro14375 Similar to U2AF35A: Splicing factor U2af small subunit A (Oryza sativa subsp. japonica OX%3D39947) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G0204 CM024070.1 + View
Vigna mungo VMungo1080G0212 CM024079.1 + View
Vitis vinifera GSVIVG01033771001 chr8 - View