Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g034290 Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. | nuclear factor Y, subunit A1 (NF-YA1) | CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B , CCAAT-binding factor, conserved site | BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A9 Spenn-ch01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G14760 LG-3 + View
Acer truncatum Atru.chr3.2710 chr3 - View
Actinidia chinensis Actinidia06344 Lachesis_group15 + View
Actinidia chinensis Actinidia16336 Lachesis_group24 + View
Actinidia chinensis Actinidia23975 Lachesis_group9 - View
Arabidopsis lyrata AL6G23390 scaffold_6 - View
Avicennia marina MSTRG.18429 ScioBoG_22153_HRSCAF_22259 + View
Avicennia marina MSTRG.21375 ScioBoG_26769_HRSCAF_26899 - View
Amaranthus hybridus Ah.06g194150 Nuclear transcription factor Y subunit A-9 (AtNF-YA-9) AmaHy_arrow1_Scaffold_6 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.14IBSY PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.P5AXXG PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G12840 nuclear factor Y, subunit A1 Encodes a subunit of CCAAT-binding complex%2C binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A%2C HAP2B%2C HAP2C)%2C it is expressed in vegetative and reproductive tissues. nuclear factor Y%2C subunit A1 (NF-YA1)%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A9 (TAIR:AT3G20910.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). nuclear factor Y%2C subunit A1 (NF-YA1)%3B CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor%2C subunit B (InterPro:IPR001289)%2C CCAAT-binding factor%2C conserved site (InterPro:IPR018362)%3B BEST Arabidopsis thaliana protein match is: nuclear factor Y%2C subunit A9 (TAIR:AT3G20910.1)%3B Has 687 Blast hits to 687 proteins in 162 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 144%3B Fungi - 133%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 29 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB08g37011 ChrB08 - View
Brassica carinata BcaC04g19177 ChrC04 + View
Brassica napus C05p43140 C05 - View
Brassica oleracea BolC9t59270H C9 + View
Brassica rapa BraA10t44594Z A10 + View
Beta vulgaris EL10Ac4g10245 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr4_EL10_PGA_scaffold1 - View
Camellia sinensis var. sinensis CSS0000821 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Sesamum indicum] Chr13 + View
Camellia sinensis var. sinensis CSS0042225 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Pyrus x bretschneideri] Contig404 - View
Cicer arietinum L. Ca_14875_v3 Ca_LG5_v3 - View
Corylus avellana Haze_19897 Similar to NFYA1: Nuclear transcription factor Y subunit A-1 (Arabidopsis thaliana OX%3D3702) 10 - View
Corylus avellana Haze_23142 Similar to NFYA1: Nuclear transcription factor Y subunit A-1 (Arabidopsis thaliana OX%3D3702) 6 + View
Citrus clementina Ciclev10015808m.g scaffold_2 + View
Cardamine hirsuta CARHR200610 Nuclear transcription factor Y subunit A-1, putative Chr6 + View
Carya illinoinensis CiPaw.13G160600 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr13 - View
Carya illinoinensis CiPaw.14G118700 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr14 - View
Citrullus lanatus ClCG02G023180 Nuclear transcription factor Y subunit A5 CG_Chr02 - View
Citrullus lanatus ClCG03G013220 Nuclear transcription factor Y subunit A-1, putative CG_Chr03 - View
Cucumis melo MELO3C014590.2 Nuclear transcription factor Y subunit A-1-like protein chr05 + View
Cucumis melo MELO3C015196.2 Nuclear transcription factor Y subunit A-1 chr02 - View
Carica papaya Cpa.g.sc84.49 supercontig_84 - View
Chenopodium quinoa AUR62000125 NFYA9: Nuclear transcription factor Y subunit A-9 C_Quinoa_Scaffold_2088 + View
Chenopodium quinoa AUR62019306 NFYA9: Nuclear transcription factor Y subunit A-9 C_Quinoa_Scaffold_3107 + View
Capsella rubella Carub.0006s1103 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED scaffold_6 - View
Cucumis sativus L. CsaV3_6G039350 Nuclear transcription factor Y subunit A chr6 - View
Cucumis sativus L. CsaV3_1G042800 Nuclear transcription factor Y subunit A chr1 - View
Daucus carota DCAR_002074 hypothetical protein DCARv2_Chr1 + View
Davidia involucrata Dinv18067 GWHABJS00000015 + View
Davidia involucrata Dinv22175 GWHABJS00000003 + View
Durio zibethinus Duzib150G0130 NW_019167882.1 - View
Durio zibethinus Duzib168G0819 NW_019168159.1 - View
Eucalyptus grandis Eucgr.J00764 Chr10 + View
Erythranthe guttata Migut.N02320 scaffold_14 + View
Erythranthe guttata Migut.D00604 scaffold_4 + View
Eutrema salsugineum Thhalv10014364m.g PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED scaffold_2 - View
Fragaria x ananassa FAN16G2500 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Fvb3-3 - View
Fragaria x ananassa FAN21G0818 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Fvb3-2 - View
Fragaria x ananassa FAN25G1345 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Fvb3-1 - View
Fragaria x ananassa FAN11G2485 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Fvb3-4 + View
Fragaria vesca FvH4_3g28780 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Fvb3 - View
Gossypium hirsutum Gohir.D13G220300 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED D13 + View
Glycine max Glyma.18G071000 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Gm18 + View
Glycine max Glyma.08G335900 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Gm08 + View
Gossypium raimondii Gorai.013G251200 Chr13 + View
Lupinus albus Lalb_Chr18g0050461 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Lalb_Chr18 - View
Lupinus albus Lalb_Chr15g0082541 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Lalb_Chr15 - View
Lotus japonicus Lj6g0002522 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED chr6 + View
Magnolia biondii MBI04_g36078_MAGBIO AED:0.11 Chr04 - View
Malus domestica MD11G1192400 nuclear factor Y Chr11 - View
Malus domestica MD03G1174600 nuclear factor Y Chr03 - View
Manihot esculenta Manes.06G163900 Chromosome06 - View
Manihot esculenta Manes.14G003100 Chromosome14 + View
Medicago truncatula Medtr3g061510 CCAAT-binding transcription factor chr3 - View
Nelumbo nucifera Nn2g15356 chr2 - View
Nelumbo nucifera Nn7g36222 chr7 + View
Nicotiana tabacum Nitab4.5_0002741g0160 CCAAT-binding transcription factor, subunit B Nitab4.5_0002741 - View
Nicotiana tabacum Nitab4.5_0001587g0040 CCAAT-binding transcription factor, subunit B Nitab4.5_0001587 - View
Olea europaea Oeu016681.2 chr11 - View
Olea europaea Oeu025871.1 chr16 + View
Petunia axillaris Peaxi162Scf00004g02521 Nuclear transcription factor Y subunit A-1 Peaxi162Scf00004 + View
Punica granatum PGR119G0208 NC_045132.1 + View
Prunus persica Prupe.4G249900 Pp04 + View
Populus trichocarpa Potri.009G052900 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr09 - View
Populus trichocarpa Potri.001G257600 PTHR12632//PTHR12632:SF14 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr01 - View
Phaseolus vulgaris Phvul.006G062200 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED Chr06 - View
Quercus lobata QL01p004648 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0052231 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim01G0192000 chr01 + View
Rhododendron simsii Rhsim13G0220900 chr13 - View
Salix brachista Sabra09G0038600 GWHAAZH00000009 - View
Simmondsia chinensis Sc09g0000740 GWHAASQ00000009 + View
Sechium edule Sed0015811 LG12 - View
Sechium edule Sed0024393 LG08 - View
Sapria himalayana SHI29789 scaffold68_2605431 + View
Solanum lycopersicum Solyc11g065700.2 Nuclear transcription factor Y subunit A-9 (AHRD V3.3 *** A0A2G2YFZ7_CAPAN) SL4.0ch11 - View
Schrenkiella parvula Sp6g31110 PTHR12632:SF14 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED ch6-6 + View
Solanum tuberosum PGSC0003DMG400010697 YA4 ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400007350 YA4 ST4.03ch11 - View
Selenicereus undatus Hund07505 Scaffold_33676 - View
Selenicereus undatus Hund22028 Scaffold_33680 - View
Trochodendron aralioides TAR623G1120 group7 - View
Trochodendron aralioides TAR633G2356 group2 + View
Theobroma cacao Thecc.09G234400 Nuclear transcription factor Y subunit A-9 Chromosome_9 + View
Tarenaya hassleriana THA.LOC104799107 nuclear transcription factor Y subunit A-1-like NW_010968505.1 + View
Tarenaya hassleriana THA.LOC104816879 nuclear transcription factor Y subunit A-9 isoform X1 NW_010965869.1 - View
Tarenaya hassleriana THA.LOC104811169 nuclear transcription factor Y subunit A-1-like NW_010965304.1 + View
Tripterygium wilfordii TWI60G0977 NC_052246.1 + View
Tripterygium wilfordii TWI34G1873 NC_052235.1 - View
Vaccinium macrocarpon vmacro04154 Similar to NFYA9: Nuclear transcription factor Y subunit A-9 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0540G2022 CM024075.1 + View
Vitis vinifera GSVIVG01025252001 chr6 + View