Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen11g009180 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 Spenn-ch11 - View
Sopen01g006160 Pentatricopeptide repeat (PPR) superfamily protein | LOCATED IN: mitochondrion | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 10 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 Spenn-ch01 - View
Sopen03g015530 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View
Sopen04g010110 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch04 - View
Sopen11g010950 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch11 - View
Sopen11g024230 SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch11 + View
Sopen03g016080 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View
Sopen06g011360 SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch06 + View
Sopen04g022860 Encodes a chloroplast RNA editing factor. | ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch04 - View
Sopen00g004200 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch00 + View
Sopen02g003370 Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase. | lovastatin insensitive 1 (LOI1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch02 + View
Sopen12g026150 Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch12 + View
Sopen07g017190 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 - View
Sopen11g019420 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch11 + View
Sopen03g011980 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G23340 LG-5 - View
Acer truncatum Atru.chr12.1513 chr12 - View
Acer truncatum Atru.chr8.1280 chr8 + View
Acer truncatum Atru.chr13.2447 chr13 - View
Actinidia chinensis Actinidia29379 Lachesis_group7 + View
Beta vulgaris EL10Ac7g17418 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0040520 PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Nelumbo nucifera] Chr12 + View
Cannabis sativa CANSAT25G0297 NC_044370.1 + View
Cicer arietinum L. Ca_03247_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_09080_v3 Ca_LG3_v3 + View
Erigeron canadensis ECA246G4991 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA240G2805 Conyza_canadensis_scaffold:5 - View
Erigeron canadensis ECA238G0796 Conyza_canadensis_scaffold:6 + View
Erigeron canadensis ECA248G2129 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA240G4549 Conyza_canadensis_scaffold:5 - View
Erigeron canadensis ECA248G0796 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA238G2703 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA248G1627 Conyza_canadensis_scaffold:9 + View
Gossypium hirsutum Gohir.A10G134100 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) A10 + View
Gossypium raimondii Gorai.009G266500 Chr09 + View
Lotus japonicus Lj2g0004281 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 + View
Medicago truncatula Medtr5g027980 pentatricopeptide (PPR) repeat protein chr5 + View
Olea europaea Oeu060292.1 chr1 + View
Olea europaea Oeu018738.1 chr11 + View
Rosa chinensis RcHm_v2.0_Chr3g0477321 RcHm_v2.0_Chr3 + View
Sequoiadendron giganteum SEGI_02784 chr7 + View
Sapria himalayana SHI01750 scaffold3_21451142 - View
Sapria himalayana SHI14712 scaffold14_12630789 - View
Trifolium pratense TPR.G34444 Tp57577_TGAC_v2_LG6 - View