Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen04g012430 pentatricopeptide (PPR) repeat-containing protein | Tetratricopeptide repeat (TPR)-like superfamily protein | LOCATED IN: mitochondrion | EXPRESSED IN: root, pedicel | EXPRESSED DURING: 4 anthesis | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch04 + View
Sopen05g027530 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch05 + View
Sopen06g011360 SLOW GROWTH 1 (SLO1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch06 + View
Sopen07g011180 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 + View
Sopen03g016890 Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. | mitochondrial RNAediting factor 1 (MEF1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 + View
Sopen00g004200 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch00 + View
Sopen00g007410 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch00 - View
Sopen12g026150 Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch12 + View
Sopen02g004430 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch02 - View
Sopen07g017190 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 - View
Sopen08g010500 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch08 + View
Sopen03g016080 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed | EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View
Sopen03g023970 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 Spenn-ch03 + View
Sopen06g004140 hypothetical protein Spenn-ch06 + View
Sopen06g008540 Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch06 + View
Sopen09g022760 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 Spenn-ch09 - View
Sopen12g017160 hypothetical protein Spenn-ch12 - View
Sopen09g009020 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch09 + View
Sopen03g015530 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View
Sopen08g016700 smr (Small MutS Related) domain-containing protein mRNA, complete cds | CID7 | FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding | INVOLVED IN: mismatch repair | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal , Region of unknown function DUF1771 | BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative Spenn-ch08 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia30599 Lachesis_group10 - View
Avicennia marina MSTRG.8044 ScioBoG_102841_HRSCAF_103114 + View
Camellia sinensis var. sinensis CSS0024748 unnamed protein product [Vitis vinifera] Chr10 - View
Capsicum annuum CAN.G624.17 PGAv.1.6.scaffold624 + View
Cicer arietinum L. Ca_04995_v3 Ca_LG2_v3 - View
Cicer arietinum L. Ca_19946_v3 Ca_LG6_v3 + View
Erigeron canadensis ECA233G2266 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA248G1517 Conyza_canadensis_scaffold:9 + View
Erigeron canadensis ECA238G2703 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA247G2265 Conyza_canadensis_scaffold:7 + View
Lotus japonicus Lj2g0018559 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) chr2 - View
Olea europaea Oeu051146.1 chr18 - View
Papaver somniferum PSO063G5446 NC_039364.1 + View
Papaver somniferum PSO478G1177 NC_039361.1 + View
Sechium edule Sed0010973 LG02 - View
Sequoiadendron giganteum SEGI_12045 chr1 + View
Sapria himalayana SHI03611 scaffold5_19632047 - View
Solanum tuberosum PGSC0003DMG400024384 Conserved gene of unknown function ST4.03ch01 - View
Solanum tuberosum PGSC0003DMG400044401 PpPPR_98 protein ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400005377 Pentatricopeptide repeat-containing protein, mitochondrial ST4.03ch07 - View
Tripterygium wilfordii TWI18G1027 NC_052241.1 - View