Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen03g011150 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch03 + View
Sopen03g026730 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: N-terminal protein myristoylation | LOCATED IN: cellular_component unknown | EXPRESSED IN: 6 plant structures | EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 Spenn-ch03 + View
Sopen10g006390 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 Spenn-ch10 + View
Sopen06g008540 Tetratricopeptide repeat (TPR)-like superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: leaf whorl, flower, seed | EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch06 + View
Sopen09g022760 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 Spenn-ch09 - View
Sopen09g012880 Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | breast cancer associated RING 1 (BARD1) | FUNCTIONS IN: transcription coactivator activity, DNA binding | INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development | LOCATED IN: intracellular | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, PHD-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 Spenn-ch09 + View
Sopen07g021720 Pentatricopeptide repeat (PPR-like) superfamily protein | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 14 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 + View
Sopen11g021170 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch11 - View
Sopen00g004200 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch00 + View
Sopen02g003370 Encodes a pentatricopeptide (PPR) protein that binds single-stranded RNA. The N-terminal portion of the protein can localize to the mitochondria. Mutations in this gene make plants less sensitive to inhibitors of the MEP and MVA pathways of isoprenoid biosynthesis and increase the activity of HMG CoA reductase. | lovastatin insensitive 1 (LOI1) | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch02 + View
Sopen02g004430 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch02 - View
Sopen02g017800 Tetratricopeptide repeat (TPR)-like superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | EXPRESSED IN: sperm cell | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch02 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Beta vulgaris EL10Ac7g17418 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0048121 PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Prunus mume] Chr9 - View
Cannabis sativa CANSAT11G0674 NC_044377.1 + View
Corylus avellana Haze_21298 Similar to PCMP-E89: Pentatricopeptide repeat-containing protein At3g13880 (Arabidopsis thaliana OX%3D3702) 3 - View
Ceratophyllum demersum CDE06G1754 4 - View
Cardamine hirsuta CARHR035750 Pentatricopeptide repeat-containing protein-like protein Chr1 - View
Erigeron canadensis ECA248G2161 Conyza_canadensis_scaffold:9 - View
Fragaria x ananassa FAN18G2000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb5-1 + View
Fragaria vesca FvH4_7g03570 PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Fvb7 + View
Glycine max Glyma.08G238750 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm08 - View
Prunus persica Prupe.1G554200 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Pp01 - View
Solanum tuberosum PGSC0003DMG400014528 Pentatricopeptide repeat-containing protein ST4.03ch02 + View
Selenicereus undatus Hund00785 Scaffold_33678 + View
Theobroma cacao Thecc.08G185900 Pentatricopeptide repeat (PPR) superfamily protein Chromosome_8 + View
Vigna mungo VMungo1127G0647 CM024076.1 - View