Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen05g011530 Putative AC transposase (ORFA) - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch05 + View
Sopen01g026300 Putative AC transposase (ORFA) - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch01 + View
Sopen05g013220 Putative AC transposase (ORFA) - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch05 - View
Sopen01g019310 Putative AC9 transposase - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch01 + View
Sopen09g010780 Putative AC transposase (ORFA) - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch09 - View
Sopen05g018440 Putative AC9 transposase - Zea mays (Maize), transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | BED zinc finger , hAT family dimerisation domain | CONTAINS InterPro DOMAIN/s: HAT dimerisation , Zinc finger, BED-type predicted | BEST Arabidopsis thaliana protein match is: BED zinc finger , hAT family dimerisation domain Spenn-ch05 - View
Sopen08g018210 hypothetical protein Spenn-ch08 + View
Sopen09g023850 hypothetical protein Spenn-ch09 + View
Sopen02g007770 hypothetical protein Spenn-ch02 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Erigeron canadensis ECA246G1838 Conyza_canadensis_scaffold:8 + View
Fragaria vesca FvH4_7g03641 PTHR23272//PTHR23272:SF45 - BED FINGER-RELATED // SUBFAMILY NOT NAMED Fvb7 + View
Olea europaea Oeu018642.1 chr13 - View
Selenicereus undatus Hund00817 Scaffold_33678 + View