Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g004230 Glycosyl hydrolase superfamily protein | FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity | INVOLVED IN: carbohydrate metabolic process | LOCATED IN: endomembrane system | EXPRESSED IN: 17 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core , Glycoside hydrolase, family 5 , Glycoside hydrolase, subgroup, catalytic core | BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein Spenn-ch01 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia11897 Lachesis_group6 - View
Arabidopsis lyrata AL8G10520 scaffold_8 + View
Amaranthus hybridus Ah.09g234240 Mannan endo-1,4-beta-mannosidase 6 (EC 3.2.1.78) (Beta-mannanase 6) (Endo-beta-1,4-mannanase 6) (OsMAN6) AmaHy_arrow1_Scaffold_9 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.09F2IP PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) arahy.Tifrunner.gnm1.Arahy.01 - View
Arabidopsis thaliana AT5G47460 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein%3B CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885)%3B BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaC03g16963 ChrC03 - View
Brassica oleracea BolC2t10961H C2 - View
Brassica oleracea BolC7t43653H C7 - View
Brassica rapa BraA02t08137Z A02 - View
Capsicum annuum CAN.G696.8 PGAv.1.6.scaffold696 - View
Cicer arietinum L. Ca_21026_v3 Ca_LG7_v3 - View
Cardamine hirsuta CARHR173900 Pentatricopeptide repeat-containing protein Chr6 + View
Cucumis melo MELO3C008015.2 pentatricopeptide repeat-containing protein At4g13650 chr08 - View
Carica papaya Cpa.g.sc27.255 supercontig_27 - View
Daucus carota DCAR_002229 hypothetical protein DCARv2_Chr1 - View
Davidia involucrata Dinv19870 GWHABJS00000016 - View
Eucalyptus grandis Eucgr.D00959 Chr04 + View
Eucalyptus grandis Eucgr.D01436 Chr04 - View
Eutrema salsugineum Thhalv10000835m.g PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) scaffold_20 - View
Fragaria x ananassa FAN09G3275 PF01535//PF03107//PF07649//PF12854//PF13041//PF14432 - PPR repeat (PPR) // C1 domain (C1_2) // C1-like domain (C1_3) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-2 - View
Hydrangea macrophylla Hma1.2p1_0657F.1_g196960 Hma1.2p1_0657F.1 + View
Lactuca sativa Lsat_1_v5_gn_9_104640 PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Lsat_1_v8_lg_9 + View
Magnolia biondii MBI19_g25582_MAGBIO AED:0.23 Chr19 - View
Magnolia biondii MBI16_g36317_MAGBIO AED:0.22 Chr16 - View
Malus domestica MD17G1113300 Tetratricopeptide repeat (TPR)-like superfamily protein Chr17 + View
Malus domestica MD09G1122400 Tetratricopeptide repeat (TPR)-like superfamily protein Chr09 + View
Nelumbo nucifera Nn1g03236 chr1 + View
Nicotiana tabacum Nitab4.5_0002499g0020 Pentatricopeptide repeat, Tetratricopeptide-like helical Nitab4.5_0002499 + View
Punica granatum PGR042G2285 NC_045130.1 - View
Pisum sativum Psat4g002320 Ribosomal S17 chr4LG4 - View
Papaver somniferum PSO675G9355 NC_039358.1 + View
Rhododendron simsii Rhsim02G0101500 chr02 - View
Sechium edule Sed0005021 LG14 + View
Solanum lycopersicum Solyc01g008710.5.1 mannan endo-1,4-beta-mannosidase SL4.0ch01 + View
Solanum lycopersicum Solyc11g012570.3 Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A2U1PDA5_ARTAN) SL4.0ch11 - View
Solanum tuberosum PGSC0003DMG400013357 Binding protein ST4.03ch11 + View
Vaccinium macrocarpon vmacro15742 Similar to PCMP-H71: Pentatricopeptide repeat-containing protein At1g74630 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0647G1279 CM024073.1 + View