Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g015270 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch01 + View
Sopen04g012430 pentatricopeptide (PPR) repeat-containing protein | Tetratricopeptide repeat (TPR)-like superfamily protein | LOCATED IN: mitochondrion | EXPRESSED IN: root, pedicel | EXPRESSED DURING: 4 anthesis | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch04 + View
Sopen09g012880 Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | breast cancer associated RING 1 (BARD1) | FUNCTIONS IN: transcription coactivator activity, DNA binding | INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development | LOCATED IN: intracellular | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, PHD-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 Spenn-ch09 + View
Sopen07g017190 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 - View
Sopen02g004430 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch02 - View
Sopen04g008620 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch04 - View
Sopen07g011180 Tetratricopeptide repeat (TPR)-like superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch07 + View
Sopen04g010110 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat , Tetratricopeptide-like helical | BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein Spenn-ch04 - View
Sopen03g011150 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch03 + View
Sopen03g015530 Pentatricopeptide repeat (PPR) superfamily protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: mitochondrion | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein Spenn-ch03 - View
Sopen11g009180 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 Spenn-ch11 - View
Sopen03g023970 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 Spenn-ch03 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.3182 chr5 - View
Amaranthus hybridus Ah.01g008740 Pentatricopeptide repeat-containing protein At3g62890 AmaHy_arrow1_Scaffold_1 + View
Brassica rapa BraA09t36725Z A09 - View
Camellia sinensis var. sinensis CSS0046560 PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Vitis vinifera] Chr4 - View
Camellia sinensis var. sinensis CSS0024748 unnamed protein product [Vitis vinifera] Chr10 - View
Cicer arietinum L. Ca_23111_v3 Ca_LG7_v3 + View
Cicer arietinum L. Ca_02044_v3 Ca_LG1_v3 + View
Cicer arietinum L. Ca_15327_v3 Ca_LG5_v3 + View
Coffea canephora Cc02_g16770 Putative Pentatricopeptide repeat-containing protein At3g12770 chr2 + View
Citrus clementina Ciclev10030191m.g scaffold_8 - View
Ceratophyllum demersum CDE05G0855 3 + View
Carya illinoinensis CiPaw.06G126800 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Chr06 + View
Citrullus lanatus ClCG11G003750 Pentatricopeptide repeat-containing protein CG_Chr11 + View
Carica papaya Cpa.g.sc37.227 supercontig_37 + View
Chenopodium quinoa AUR62016858 PCMP-H57: Pentatricopeptide repeat-containing protein At3g14330 C_Quinoa_Scaffold_3670 - View
Chenopodium quinoa AUR62010107 PCMP-H40: Pentatricopeptide repeat-containing protein At1g11290, chloroplastic C_Quinoa_Scaffold_1257 - View
Chenopodium quinoa AUR62013101 PCMP-H40: Pentatricopeptide repeat-containing protein At1g11290, chloroplastic C_Quinoa_Scaffold_1040 - View
Chenopodium quinoa AUR62026968 PCMP-H16: Pentatricopeptide repeat-containing protein At5g04780 C_Quinoa_Scaffold_2185 + View
Cucumis sativus L. CsaV3_7G000540 Pentatricopeptide repeat-containing protein chr7 + View
Cucumis sativus L. CsaV3_2G015390 Pentatricopeptide repeat-containing protein chr2 - View
Daucus carota DCAR_003689 hypothetical protein DCARv2_Chr1 - View
Durio zibethinus Duzib052G0233 NW_019167849.1 - View
Erigeron canadensis ECA232G2348 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA247G2399 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA232G3324 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA248G2161 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA238G4394 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA233G4964 Conyza_canadensis_scaffold:1 - View
Erigeron canadensis ECA240G4774 Conyza_canadensis_scaffold:5 - View
Erigeron canadensis ECA240G2805 Conyza_canadensis_scaffold:5 - View
Erigeron canadensis ECA240G2557 Conyza_canadensis_scaffold:5 - View
Erigeron canadensis ECA238G0782 Conyza_canadensis_scaffold:6 - View
Erigeron canadensis ECA246G4991 Conyza_canadensis_scaffold:8 - View
Eucalyptus grandis Eucgr.I01339 Chr09 - View
Erythranthe guttata Migut.N01292 scaffold_14 + View
Fragaria x ananassa FAN15G0526 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb2-4 + View
Gossypium hirsutum Gohir.D12G032100 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) D12 - View
Gossypium hirsutum Gohir.D02G021400 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) D02 + View
Gossypium hirsutum Gohir.A12G040200 PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) A12 + View
Glycine max Glyma.04G007000 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Gm04 + View
Gossypium raimondii Gorai.008G032800 Chr08 - View
Gossypium raimondii Gorai.005G026900 Chr05 + View
Gossypium raimondii Gorai.011G289700 Chr11 + View
Helianthus annuus HanXRQChr17g0543981 Probable pentatricopeptide repeat-containing protein At2g17210 HanXRQChr17 + View
Lotus japonicus Lj1g0013669 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) chr1 - View
Lonicera japonica Lj9P384T16 GWHAAZE00000009 + View
Lonicera japonica Lj4C29T9 GWHAAZE00000004 - View
Manihot esculenta Manes.02G220400 Chromosome02 - View
Manihot esculenta Manes.02G104400 Chromosome02 - View
Medicago truncatula Medtr3g117620 PPR containing plant-like protein chr3 - View
Nelumbo nucifera Nn5g29222 chr5 + View
Punica granatum PGR142G1497 NC_045128.1 + View
Papaver somniferum PSO210G0502 NC_039359.1 - View
Papaver somniferum PSO210G5447 NC_039359.1 + View
Papaver somniferum PSO675G9274 NC_039358.1 - View
Quercus lobata QL11p046815 11 - View
Rhododendron simsii Rhsim05G0066200 chr05 - View
Striga asiatica SGA_v2.0_scaffold58G20409 scaffold58 - View
Striga asiatica SGA_v2.0_scaffold207G41890 scaffold207 + View
Salix brachista Sabra02G0021900 GWHAAZH00000002 - View
Simmondsia chinensis Sc08g0001250 GWHAASQ00000008 - View
Sechium edule Sed0007119 LG01 + View
Sechium edule Sed0009676 LG05 - View
Sapria himalayana SHI27745 scaffold50_4036370 + View
Solanum lycopersicum Solyc10g054730.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200QQW1_9MAGN) SL4.0ch10 - View
Solanum tuberosum PGSC0003DMG400026708 Pentatricopeptide repeat-containing protein ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400011957 Tetratricopeptide-like helical ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400017889 Pentatricopeptide repeat-containing protein ST4.03ch05 - View
Solanum tuberosum PGSC0003DMG400017963 Pentatricopeptide repeat-containing protein ST4.03ch01 + View
Theobroma cacao Thecc.08G034800 Pentatricopeptide repeat (PPR-like) superfamily protein Chromosome_8 - View
Theobroma cacao Thecc.02G072700 Chromosome_2 + View
Tarenaya hassleriana THA.LOC104819641 pentatricopeptide repeat-containing protein DOT4%2C chloroplastic-like NW_010966177.1 - View
Tripterygium wilfordii TWI75G1542 NC_052253.1 - View
Tripterygium wilfordii TWI75G0181 NC_052253.1 + View
Vaccinium macrocarpon vmacro17416 Similar to PCMP-H40: Pentatricopeptide repeat-containing protein At1g11290, chloroplastic (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1309G1600 CM024072.1 - View
Vitis vinifera GSVIVG01024139001 chr3 - View
Vitis vinifera GSVIVG01023860001 chr3 + View
Vitis vinifera GSVIVG01009789001 chr18 - View