Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen08g030570 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: 8 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch08 - View
Sopen01g039560 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch01 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG10G15720 LG-10 - View
Actinidia chinensis Actinidia20239 Lachesis_group6 - View
Actinidia chinensis Actinidia08637 Lachesis_group6 + View
Actinidia chinensis Actinidia10135 Lachesis_group0 + View
Arabidopsis lyrata AL4G45900 scaffold_4 - View
Avicennia marina MSTRG.25672 ScioBoG_4119_HRSCAF_4138 - View
Avicennia marina MSTRG.1806 ScioBoG_102834_HRSCAF_103055 + View
Amaranthus hybridus Ah.12g052550 Putative RING-H2 finger protein ATL21A (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ATL21A) AmaHy_arrow1_Scaffold_12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.4PH81Y PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AN47DH PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) arahy.Tifrunner.gnm1.Arahy.08 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.MC428D PTHR14155//PTHR14155:SF157//PTHR27009 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED // FAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.05 - View
Arabidopsis thaliana AT2G46493 RING/U-box superfamily protein RING/U-box superfamily protein%3B FUNCTIONS IN: zinc ion binding%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G46494.1). Chr2 - View
Brassica carinata BcaB02g08145 ChrB02 + View
Brassica carinata BcaC02g10246 ChrC02 - View
Brassica napus C04p01430 C04 + View
Brassica napus C04p31130 C04 + View
Brassica oleracea BolC4t24652H C4 + View
Brassica rapa BraA04t15813Z A04 + View
Beta vulgaris EL10Ac1g00276 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED Chr1_EL10_PGA_scaffold3 + View
Beta vulgaris EL10Ac5g12914 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Chr5_EL10_PGA_scaffold2 - View
Capsicum annuum CAN.G986.9 PGAv.1.6.scaffold986 + View
Corylus avellana Haze_15650 Similar to ATL21A: Putative RING-H2 finger protein ATL21A (Arabidopsis thaliana OX%3D3702) 11 - View
Coffea canephora Cc02_g01710 Putative RING-H2 finger protein ATL21A chr2 + View
Coffea canephora Cc02_g39280 Putative RING-H2 finger protein ATL21A chr2 - View
Coffea canephora Cc08_g16060 Putative RING-H2 finger protein ATL21A chr8 - View
Citrus clementina Ciclev10023976m.g scaffold_3 + View
Citrus clementina Ciclev10020705m.g scaffold_3 + View
Cardamine hirsuta CARHR141800 Ring finger protein, putative Chr4 - View
Carya illinoinensis CiPaw.01G075900 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Chr01 - View
Carya illinoinensis CiPaw.12G083100 PF13947 - Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Chr12 + View
Carya illinoinensis CiPaw.11G121600 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Chr11 + View
Citrullus lanatus ClCG05G000850 RING finger protein CG_Chr05 + View
Citrullus lanatus ClCG05G008830 RING/U-box superfamily protein LENGTH=382 CG_Chr05 - View
Cucumis melo MELO3C006076.2 RING-H2 finger protein ATL67 chr06 - View
Cucumis melo MELO3C006027.2 RING-H2 finger protein ATL3K, putative chr06 + View
Carica papaya Cpa.g.sc96.8 supercontig_96 - View
Chenopodium quinoa AUR62019838 ATL21A: Putative RING-H2 finger protein ATL21A C_Quinoa_Scaffold_1480 - View
Chenopodium quinoa AUR62004486 ATL22: RING-H2 finger protein ATL22 C_Quinoa_Scaffold_4250 - View
Capsella rubella Carub.0004s2918 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) scaffold_4 - View
Cucumis sativus L. CsaV3_3G008090 Ring finger protein, putative chr3 + View
Daucus carota DCAR_027701 hypothetical protein DCARv2_Chr8 - View
Davidia involucrata Dinv29297 GWHABJS00000004 + View
Durio zibethinus Duzib133G0661 NW_019167938.1 - View
Durio zibethinus Duzib138G0024 NW_019167893.1 - View
Durio zibethinus Duzib084G0974 NW_019167827.1 - View
Durio zibethinus Duzib205G1510 NW_019168381.1 - View
Erigeron canadensis ECA234G1051 Conyza_canadensis_scaffold:4 - View
Eucalyptus grandis Eucgr.E00055 Chr05 + View
Eucalyptus grandis Eucgr.D01736 Chr04 - View
Erythranthe guttata Migut.E01252 scaffold_5 - View
Erythranthe guttata Migut.A00643 scaffold_1 + View
Erythranthe guttata Migut.N01549 scaffold_14 + View
Erythranthe guttata Migut.B01861 scaffold_2 - View
Eutrema salsugineum Thhalv10006346m.g scaffold_19 + View
Fragaria x ananassa FAN01G0428 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Fvb7-4 + View
Fragaria x ananassa FAN10G4059 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Fvb7-1 - View
Fragaria x ananassa FAN13G1873 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Fvb5-2 + View
Fragaria x ananassa FAN06G3493 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Fvb7-2 - View
Fragaria x ananassa FAN06G4106 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Fvb7-2 - View
Fragaria vesca FvH4_7g16350 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) Fvb7 - View
Gossypium hirsutum Gohir.D12G115500 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) D12 - View
Gossypium hirsutum Gohir.A12G111966 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) A12 - View
Gossypium hirsutum Gohir.A12G236350 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED A12 - View
Gossypium hirsutum Gohir.D11G014300 PF13639 - Ring finger domain (zf-RING_2) D11 - View
Gossypium hirsutum Gohir.A11G014100 PF13639 - Ring finger domain (zf-RING_2) A11 - View
Glycine max Glyma.07G056200 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) Gm07 + View
Glycine max Glyma.16G025100 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Gm16 + View
Glycine max Glyma.08G022900 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Gm08 + View
Glycine max Glyma.19G255700 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Gm19 - View
Glycine max Glyma.05G217000 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Gm05 + View
Gossypium raimondii Gorai.007G014700 Chr07 - View
Gossypium raimondii Gorai.008G125000 Chr08 - View
Gossypium raimondii Gorai.004G133400 Chr04 + View
Helianthus annuus HanXRQChr06g0170691 Probable RING/U-box superfamily protein HanXRQChr06 - View
Lupinus albus Lalb_Chr10g0100481 KOG1493 - Anaphase-promoting complex (APC), subunit 11 Lalb_Chr10 - View
Lupinus albus Lalb_Chr18g0044411 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED Lalb_Chr18 - View
Lupinus albus Lalb_Chr11g0066771 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Lalb_Chr11 - View
Lotus japonicus Lj1g0007890 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) chr1 + View
Lotus japonicus Lj4g0022768 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED chr4 - View
Lotus japonicus Lj3g0015521 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED chr3 + View
Lonicera japonica Lj3A907T65 GWHAAZE00000003 + View
Lactuca sativa Lsat_1_v5_gn_3_10681 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Lsat_1_v8_lg_3 - View
Lactuca sativa Lsat_1_v5_gn_4_33140 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_7_1260 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) Lsat_1_v8_lg_7 + View
Malus domestica MD07G1290600 RING/U-box superfamily protein Chr07 + View
Malus domestica MD07G1148900 RING/U-box superfamily protein Chr07 - View
Manihot esculenta Manes.06G159100 Chromosome06 - View
Manihot esculenta Manes.05G023400 Chromosome05 + View
Medicago truncatula Medtr8g027745 RING-H2 finger protein ATL21A, putative chr8 + View
Medicago truncatula Medtr5g009190 RING-H2 finger ATL21A-like protein chr5 - View
Medicago truncatula Medtr7g117340 RING/U-box protein, putative chr7 - View
Nicotiana tabacum Nitab4.5_0001715g0060 Zinc finger, RING-type, Zinc finger, RING/FYVE/PHD-type Nitab4.5_0001715 - View
Olea europaea Oeu007899.1 chr15 - View
Petunia axillaris Peaxi162Scf00074g00927 RING/U-box superfamily protein Peaxi162Scf00074 + View
Petunia axillaris Peaxi162Scf00786g00319 RING/U-box superfamily protein Peaxi162Scf00786 + View
Punica granatum PGR042G1802 NC_045130.1 + View
Punica granatum PGR042G0259 NC_045130.1 + View
Punica granatum PGR042G2727 NC_045130.1 + View
Prunus persica Prupe.2G187400 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) Pp02 - View
Papaver somniferum PSO384G4965 NC_039368.1 + View
Populus trichocarpa Potri.003G139900 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Chr03 - View
Populus trichocarpa Potri.014G098200 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Chr14 - View
Populus trichocarpa Potri.002G170300 PTHR14155:SF157 - RING-H2 FINGER PROTEIN ATL69-RELATED Chr02 - View
Populus trichocarpa Potri.012G011500 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Chr12 - View
Phaseolus vulgaris Phvul.010G113700 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Chr10 - View
Phaseolus vulgaris Phvul.009G054000 PF13639//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase C-terminal (WAK_assoc) Chr09 + View
Phaseolus vulgaris Phvul.002G298300 PF13639//PF13947 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Chr02 + View
Phaseolus vulgaris Phvul.006G112600 PF13639//PF13947//PF14380 - Ring finger domain (zf-RING_2) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) // Wall-associated receptor kinase C-terminal (WAK_assoc) Chr06 - View
Quercus lobata QL04p061142 4 + View
Rosa chinensis RcHm_v2.0_Chr1g0359361 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim03G0201300 chr03 + View
Rhododendron simsii Rhsim07G0082200 chr07 + View
Rhododendron simsii Rhsim03G0206000 chr03 - View
Rhododendron simsii Rhsim07G0004500 chr07 + View
Striga asiatica SGA_v2.0_scaffold5G03014 scaffold5 - View
Salix brachista Sabra02G0142000 GWHAAZH00000002 + View
Salix brachista Sabra03G0100900 GWHAAZH00000003 - View
Salix brachista Sabra01G0068100 GWHAAZH00000001 + View
Salix brachista Sabra14G0072000 GWHAAZH00000014 - View
Simmondsia chinensis Sc01g0002730 GWHAASQ00000001 - View
Simmondsia chinensis Sc13g0009700 GWHAASQ00000013 + View
Sechium edule Sed0014880 LG02 - View
Sechium edule Sed0014553 LG13 + View
Sechium edule Sed0011948 LG12 + View
Sechium edule Sed0017808 LG07 + View
Solanum lycopersicum Solyc10g009487.1 RING/U-box superfamily protein (AHRD V3.3 *-* A0A2U1L556_ARTAN) SL4.0ch10 + View
Solanum lycopersicum Solyc01g095810.3 RING/U-box superfamily protein (AHRD V3.3 *** A0A2U1KEI5_ARTAN) SL4.0ch01 - View
Solanum lycopersicum Solyc08g082310.3 RING/U-box superfamily protein (AHRD V3.3 *** F4KJ04_ARATH) SL4.0ch08 - View
Schrenkiella parvula Sp5g01650 PTHR14155//PTHR14155:SF157 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL69-RELATED ch5-1 + View
Solanum tuberosum PGSC0003DMG400007690 RING-H2 finger protein ATL3K ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400009117 Ring finger protein ST4.03ch03 - View
Solanum tuberosum PGSC0003DMG400000219 Zinc finger (C3HC4-type RING finger) family protein ST4.03ch01 - View
Selenicereus undatus Hund14221 Scaffold_33677 + View
Trochodendron aralioides TAR375G0338 group15 - View
Trochodendron aralioides TAR629G1124 group0 - View
Tarenaya hassleriana THA.LOC104825140 putative RING-H2 finger protein ATL21A NW_010966986.1 - View
Trifolium pratense TPR.G4781 Tp57577_TGAC_v2_LG6 + View
Tripterygium wilfordii TWI23G0471 NC_052239.1 + View
Tripterygium wilfordii TWI23G0685 NC_052239.1 - View
Vaccinium macrocarpon vmacro13158 Similar to ATL21A: Putative RING-H2 finger protein ATL21A (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G3050 CM024069.1 - View
Vigna mungo VMungo0540G1481 CM024075.1 + View
Vitis vinifera GSVIVG01027094001 chr15 + View
Vitis vinifera GSVIVG01019530001 chr2 - View