Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen01g004900 Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2. | decapping 1 (DCP1) | CONTAINS InterPro DOMAIN/s: Dcp1-like decapping Spenn-ch01 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr8.1440 chr8 - View
Acer truncatum Atru.chr3.3171 chr3 - View
Actinidia chinensis Actinidia35472 Lachesis_group2 + View
Actinidia chinensis Actinidia05399 Lachesis_group5 + View
Actinidia chinensis Actinidia37074 Lachesis_group9 + View
Avicennia marina MSTRG.17699 ScioBoG_19834_HRSCAF_19925 - View
Avicennia marina MSTRG.18769 ScioBoG_22153_HRSCAF_22259 + View
Avicennia marina MSTRG.21028 ScioBoG_26769_HRSCAF_26899 - View
Amaranthus hybridus Ah.08g210370 mRNA-decapping enzyme-like protein (EC 3.-.-.-) (DCP1 homolog) AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy4G02720 CHR04 - View
Aquilegia oxysepala Aqoxy2G01053 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.UI7WMA K12611 - mRNA-decapping enzyme 1B (DCP1B) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.II55D9 K12611 - mRNA-decapping enzyme 1B (DCP1B) arahy.Tifrunner.gnm1.Arahy.18 + View
Arabidopsis thaliana AT1G08370 decapping 1 Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However%2C unlike DCP2%2C DCP1 itself does not have mRNA decapping activity in vitro. DCP1%2C DCP2 and VCS colocalize in cytoplasmic loci%2C which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1%2C DCP2%2C and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage%2C with disorganized veins%2C swollen root hairs%2C and altered epidermal cell morphology. The protein was shown by immunoprecipitation not to interact with DCP2. decapping 1 (DCP1)%3B CONTAINS InterPro DOMAIN/s: Dcp1-like decapping (InterPro:IPR010334)%3B Has 3561 Blast hits to 2917 proteins in 377 species: Archae - 4%3B Bacteria - 239%3B Metazoa - 1310%3B Fungi - 561%3B Plants - 741%3B Viruses - 142%3B Other Eukaryotes - 564 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC07g42531 ChrC07 + View
Brassica napus C08p50040 C08 - View
Beta vulgaris EL10Ac7g16849 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr7_EL10_PGA_scaffold5 - View
Beta vulgaris EL10Ac7g16330 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0012979 hypothetical protein JCGZ_13561 [Jatropha curcas] Chr11 - View
Camellia sinensis var. sinensis CSS0010666 hypothetical protein JCGZ_13561 [Jatropha curcas] Chr13 + View
Capsicum annuum CAN.G919.40 PGAv.1.6.scaffold919 + View
Cicer arietinum L. Ca_01647_v3 Ca_LG1_v3 - View
Corylus avellana Haze_19655 Similar to At1g08370: mRNA-decapping enzyme-like protein (Arabidopsis thaliana OX%3D3702) 10 + View
Corylus avellana Haze_23349 Similar to At1g08370: mRNA-decapping enzyme-like protein (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc01_g08840 mRNA-decapping enzyme-like protein chr1 - View
Coffea canephora Cc06_g06200 mRNA-decapping enzyme-like protein chr6 + View
Citrus clementina Ciclev10028751m.g scaffold_8 - View
Citrus clementina Ciclev10012009m.g scaffold_6 - View
Ceratophyllum demersum CDE08G0722 6 + View
Ceratophyllum demersum CDE06G0357 4 - View
Carpinus fangiana Cfa016649 Cfa07 + View
Carpinus fangiana Cfa009989 Cfa04 - View
Cardamine hirsuta CARHR008250 mRNA-decapping enzyme-like protein Chr1 + View
Carya illinoinensis CiPaw.09G017500 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr09 + View
Carya illinoinensis CiPaw.10G012600 KOG2868 - Decapping enzyme complex component DCP1 Chr10 + View
Carya illinoinensis CiPaw.13G133100 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr13 - View
Citrullus lanatus ClCG04G010230 mRNA-decapping enzyme-like protein CG_Chr04 + View
Carica papaya Cpa.g.sc195.21 supercontig_195 + View
Carica papaya Cpa.g.sc104.90 supercontig_104 - View
Chenopodium quinoa AUR62020258 At1g08370: mRNA-decapping enzyme-like protein C_Quinoa_Scaffold_2465 - View
Chenopodium quinoa AUR62001525 At1g08370: mRNA-decapping enzyme-like protein C_Quinoa_Scaffold_2716 + View
Capsella rubella Carub.0001s0772 K12611 - mRNA-decapping enzyme 1B (DCP1B) scaffold_1 + View
Cucumis sativus L. CsaV3_6G040870 mRNA-decapping enzyme-like protein chr6 + View
Daucus carota DCAR_020735 hypothetical protein DCARv2_Chr6 + View
Daucus carota DCAR_013415 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv31723 GWHABJS00000015 + View
Davidia involucrata Dinv21164 GWHABJS00000021 - View
Davidia involucrata Dinv22820 GWHABJS00000007 - View
Davidia involucrata Dinv08936 GWHABJS00000010 + View
Durio zibethinus Duzib168G1661 NW_019168159.1 + View
Durio zibethinus Duzib106G1427 NW_019168492.1 - View
Durio zibethinus Duzib093G0468 NW_019167937.1 - View
Durio zibethinus Duzib170G0847 NW_019167871.1 - View
Eucalyptus grandis Eucgr.B03826 Chr02 - View
Erythranthe guttata Migut.N02475 scaffold_14 - View
Erythranthe guttata Migut.D02429 scaffold_4 - View
Fragaria x ananassa FAN05G1536 PF00076//PF06058 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Dcp1-like decapping family (DCP1) Fvb6-3 + View
Fragaria x ananassa FAN11G0936 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb3-4 + View
Fragaria x ananassa FAN05G1650 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb6-3 + View
Fragaria x ananassa FAN16G1226 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb3-3 - View
Fragaria x ananassa FAN02G3259 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb6-4 + View
Fragaria x ananassa FAN21G1767 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb3-2 + View
Fragaria vesca FvH4_3g25640 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb3 + View
Fragaria vesca FvH4_6g19510 K12611 - mRNA-decapping enzyme 1B (DCP1B) Fvb6 + View
Gossypium hirsutum Gohir.D09G133300 K12611 - mRNA-decapping enzyme 1B (DCP1B) D09 - View
Gossypium hirsutum Gohir.D08G016900 PTHR16290//PTHR16290:SF3 - TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 // MRNA-DECAPPING ENZYME-LIKE PROTEIN D08 + View
Gossypium hirsutum Gohir.A08G006700 PTHR16290//PTHR16290:SF3 - TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1 // MRNA-DECAPPING ENZYME-LIKE PROTEIN A08 + View
Gossypium hirsutum Gohir.D11G337700 K12611 - mRNA-decapping enzyme 1B (DCP1B) D11 - View
Glycine max Glyma.19G196300 K12611 - mRNA-decapping enzyme 1B (DCP1B) Gm19 + View
Glycine max Glyma.13G314900 K12611 - mRNA-decapping enzyme 1B (DCP1B) Gm13 - View
Glycine max Glyma.12G186600 K12611 - mRNA-decapping enzyme 1B (DCP1B) Gm12 + View
Gossypium raimondii Gorai.009G399300 Chr09 - View
Gossypium raimondii Gorai.007G367700 Chr07 - View
Gossypium raimondii Gorai.004G011200 Chr04 + View
Lupinus albus Lalb_Chr24g0393501 K12611 - mRNA-decapping enzyme 1B (DCP1B) Lalb_Chr24 - View
Lupinus albus Lalb_Chr20g0111571 K12611 - mRNA-decapping enzyme 1B (DCP1B) Lalb_Chr20 - View
Lotus japonicus Lj3g0016489 K12611 - mRNA-decapping enzyme 1B (DCP1B) chr3 - View
Lonicera japonica Lj1A257G22 GWHAAZE00000001 + View
Lonicera japonica Lj2A968G33 GWHAAZE00000002 + View
Malus domestica MD11G1168500 decapping 1 Chr11 + View
Malus domestica MD12G1031300 decapping 1 Chr12 + View
Malus domestica MD03G1149600 decapping 1 Chr03 + View
Malus domestica MD14G1031700 decapping 1 Chr14 + View
Manihot esculenta Manes.09G051800 Chromosome09 - View
Manihot esculenta Manes.08G028800 Chromosome08 + View
Manihot esculenta Manes.11G164100 Chromosome11 + View
Medicago truncatula Medtr2g086970 mRNA-decapping enzyme-like protein chr2 + View
Nicotiana tabacum Nitab4.5_0005472g0070 Dcp1-like decapping, Pleckstrin homology-like domain Nitab4.5_0005472 + View
Olea europaea Oeu035574.3 chr11 + View
Oryza sativa ssp. japonica Os11g0155000 Dcp1-like decapping family protein. chr11 + View
Petunia axillaris Peaxi162Scf00091g00717 mRNA-decapping enzyme-like protein Peaxi162Scf00091 + View
Punica granatum PGR004G1309 NC_045131.1 - View
Punica granatum PGR102G2768 NC_045129.1 + View
Prunus persica Prupe.6G135600 K12611 - mRNA-decapping enzyme 1B (DCP1B) Pp06 + View
Prunus persica Prupe.7G101100 K12611 - mRNA-decapping enzyme 1B (DCP1B) Pp07 - View
Pisum sativum Psat5g257840 Dcp1-like decapping family chr5LG3 + View
Papaver somniferum PSO339G5971 NC_039366.1 + View
Papaver somniferum PSO384G3187 NC_039368.1 + View
Populus trichocarpa Potri.009G160200 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr09 + View
Populus trichocarpa Potri.006G208600 PTHR16290:SF3 - MRNA-DECAPPING ENZYME-LIKE PROTEIN Chr06 - View
Populus trichocarpa Potri.016G075200 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr16 - View
Phaseolus vulgaris Phvul.005G122100 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr05 - View
Phaseolus vulgaris Phvul.001G192600 K12611 - mRNA-decapping enzyme 1B (DCP1B) Chr01 + View
Quercus lobata QL01p011868 1 - View
Quercus lobata QL07p038117 7 - View
Rhododendron simsii Rhsim01G0203900 chr01 - View
Rhododendron simsii Rhsim03G0069800 chr03 - View
Striga asiatica SGA_v2.0_scaffold22G09836 scaffold22 - View
Striga asiatica SGA_v2.0_scaffold100G29605 scaffold100 + View
Salvia bowleyana SalBow3G1847 GWHASIU00000006 - View
Salix brachista Sabra06G0160500 GWHAAZH00000006 - View
Salix brachista Sabra16G0077700 GWHAAZH00000016 - View
Salix brachista Sabra09G0125400 GWHAAZH00000009 + View
Simmondsia chinensis Sc21g0006960 GWHAASQ00000021 - View
Sechium edule Sed0001825 LG14 - View
Solanum lycopersicum Solyc06g074210.3 mRNA-decapping enzyme-like protein (AHRD V3.3 *** A0A2G3CBG2_CAPCH) SL4.0ch06 - View
Solanum tuberosum PGSC0003DMG400005889 MRNA-decapping enzyme ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400014735 MRNA-decapping enzyme ST4.03ch01 - View
Selenicereus undatus Hund18775 Scaffold_33675 + View
Trochodendron aralioides TAR623G0386 group7 + View
Theobroma cacao Thecc.09G279100 Chromosome_9 - View
Tarenaya hassleriana THA.LOC104800517 mRNA-decapping enzyme-like protein NW_010969548.1 - View
Tripterygium wilfordii TWI75G0010 NC_052253.1 + View
Tripterygium wilfordii TWI31G0363 NC_052233.1 - View
Tripterygium wilfordii TWI79G1089 NC_052238.1 + View
Vaccinium macrocarpon vmacro14341 Similar to At1g08370: mRNA-decapping enzyme-like protein (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1383G1807 CM024070.1 + View
Vigna mungo VMungo1080G0599 CM024079.1 + View
Vitis vinifera GSVIVG01033895001 chr8 - View
Zea mays Zm00001eb406930 Zm00001e039391 mRNA-decapping enzyme-like protein 10 + View
Zea mays Zm00001eb197150 Zm00001e024154 mRNA-decapping enzyme-like protein 4 - View