Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen03g033800 Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). | BIM1 | FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 . Spenn-ch03 + View
Sopen04g001260 BES1-interacting Myc-like protein 2 (BIM2) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain , Helix-loop-helix DNA-binding | BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein Spenn-ch04 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G18410 LG-3 + View
Aethionema arabicum Aa31LG11G2490 LG-11 + View
Acer truncatum Atru.chr11.1550 chr11 + View
Acer truncatum Atru.chr9.602 chr9 - View
Actinidia chinensis Actinidia04791 Lachesis_group1 - View
Actinidia chinensis Actinidia26274 Lachesis_group3 - View
Actinidia chinensis Actinidia10438 Lachesis_group13 - View
Arabidopsis lyrata AL2G28060 scaffold_2 + View
Arabidopsis lyrata AL6G18510 scaffold_6 - View
Avicennia marina MSTRG.4498 ScioBoG_102837_HRSCAF_103074 - View
Avicennia marina MSTRG.2288 ScioBoG_102834_HRSCAF_103055 + View
Avicennia marina MSTRG.783 ScioBoG_102831_HRSCAF_103044 - View
Amaranthus hybridus Ah.11g047380 Transcription factor BIM1 (BES1-interacting Myc-like protein 1) (Basic helix-loop-helix protein 46) (AtbHLH46) (bHLH 46) (Transcription factor EN 126) (bHLH transcription factor bHLH046) AmaHy_arrow1_Scaffold_11 + View
Aquilegia oxysepala Aqoxy3G03756 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.3TU9DB PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 arahy.Tifrunner.gnm1.Arahy.01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A7SJM3 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 arahy.Tifrunner.gnm1.Arahy.11 - View
Arabidopsis thaliana AT1G69010 BES1-interacting Myc-like protein 2 Encodes BES1-INTERACTING MYC-LIKE 2 (BIM2)%2C a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BES1-interacting Myc-like protein 2 (BIM2)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: dTDP-rhamnose biosynthetic process%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G08130.3)%3B Has 2743 Blast hits to 2732 proteins in 181 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 222%3B Fungi - 63%3B Plants - 2453%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT5G08130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Encodes a basic helix-loop-helix (bHLH) family protein BIM1 (BES1-INTERACTING MYC-LIKE 1)%2C involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG). Positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BIM1%3B FUNCTIONS IN: protein binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1)%3B Has 2460 Blast hits to 2449 proteins in 184 species: Archae - 0%3B Bacteria - 2%3B Metazoa - 308%3B Fungi - 82%3B Plants - 2059%3B Viruses - 0%3B Other Eukaryotes - 9 (source: NCBI BLink). BIM1%3B FUNCTIONS IN: protein binding%2C DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: brassinosteroid mediated signaling pathway%2C regulation of transcription%3B LOCATED IN: nucleus%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1). Chr5 - View
Arabidopsis thaliana AT5G38860 BES1-interacting Myc-like protein 3 Encodes BES1-INTERACTING MYC-LIKE 3 (BIM3)%2C a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings. BES1-interacting Myc-like protein 3 (BIM3)%3B FUNCTIONS IN: DNA binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092)%2C Helix-loop-helix DNA-binding (InterPro:IPR011598)%3B BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr5 + View
Amborella trichopoda ATR0691G058 AmTr_v1.0_scaffold00006 - View
Brassica carinata BcaB03g15869 ChrB03 + View
Brassica napus A10p28540 A10 + View
Brassica napus A07p35410 A07 + View
Brassica napus A02p15560 A02 + View
Brassica napus A02p41200 A02 - View
Brassica napus C09p68820 C09 + View
Brassica napus C06p40830 C06 - View
Brassica oleracea BolC6t39350H C6 + View
Brassica oleracea BolC9t59629H C9 + View
Brassica rapa BraA07t31132Z A07 + View
Brassica rapa BraA10t44903Z A10 + View
Brassica rapa BraA02t06617Z A02 + View
Beta vulgaris EL10Ac5g11196 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 Chr5_EL10_PGA_scaffold2 - View
Camellia sinensis var. sinensis CSS0006981 PREDICTED: transcription factor BIM1 isoform X1 [Vitis vinifera] Chr2 + View
Camellia sinensis var. sinensis CSS0046610 PREDICTED: transcription factor BIM1 isoform X1 [Vitis vinifera] Chr15 - View
Capsicum annuum CAN.G587.63 PGAv.1.6.scaffold587 - View
Cicer arietinum L. Ca_21751_v3 Ca_LG7_v3 + View
Coffea canephora Cc04_g08190 Putative Transcription factor BIM1 chr4 + View
Citrus clementina Ciclev10020248m.g scaffold_3 - View
Ceratophyllum demersum CDE01G0595 11 - View
Carpinus fangiana Cfa008842 Cfa03 + View
Cardamine hirsuta CARHR061880 BHLH transcription factor Chr2 + View
Cardamine hirsuta CARHR205060 BHLH transcription factor Chr6 + View
Carya illinoinensis CiPaw.15G114700 KOG0561 - bHLH transcription factor Chr15 - View
Carya illinoinensis CiPaw.06G095300 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Chr06 - View
Carya illinoinensis CiPaw.16G080500 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Chr16 - View
Citrullus lanatus ClCG04G011530 Transcription factor BIM1, putative CG_Chr04 + View
Cucumis melo MELO3C017257.2 transcription factor BIM1 chr02 + View
Cucumis melo MELO3C002057.2 transcription factor BIM1-like isoform X2 chr12 + View
Carica papaya Cpa.g.sc3.225 supercontig_3 + View
Chenopodium quinoa AUR62032143 BIM1: Transcription factor BIM1 C_Quinoa_Scaffold_1177 - View
Chenopodium quinoa AUR62039664 BIM1: Transcription factor BIM1 C_Quinoa_Scaffold_1452 + View
Capsella rubella Carub.0002s1562 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 scaffold_2 + View
Capsella rubella Carub.0007s3699 PTHR12565:SF85 - TRANSCRIPTION FACTOR BIM3 scaffold_7 - View
Capsella rubella Carub.0006s0702 scaffold_6 - View
Cucumis sativus L. CsaV3_1G006280 transcription factor BIM1-like isoform X2 chr1 - View
Cucumis sativus L. CsaV3_1G003270 transcription factor BIM1 chr1 + View
Daucus carota DCAR_026689 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv17466 GWHABJS00000006 + View
Davidia involucrata Dinv38636 GWHABJS00000019 - View
Davidia involucrata Dinv34016 GWHABJS00000008 + View
Durio zibethinus Duzib068G1269 NW_019167838.1 - View
Durio zibethinus Duzib268G1711 NW_019168270.1 + View
Durio zibethinus Duzib084G1433 NW_019167827.1 - View
Durio zibethinus Duzib251G0026 NW_019167971.1 + View
Durio zibethinus Duzib205G1049 NW_019168381.1 - View
Durio zibethinus Duzib248G1444 NW_019168048.1 - View
Erigeron canadensis ECA246G2033 Conyza_canadensis_scaffold:8 - View
Erigeron canadensis ECA246G3838 Conyza_canadensis_scaffold:8 + View
Erigeron canadensis ECA247G2645 Conyza_canadensis_scaffold:7 + View
Eucalyptus grandis Eucgr.B03113 Chr02 + View
Eucalyptus grandis Eucgr.B00645 Chr02 - View
Eutrema salsugineum Thhalv10013181m.g PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 scaffold_2 - View
Eutrema salsugineum Thhalv10018889m.g PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 scaffold_9 - View
Fragaria x ananassa FAN08G1560 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Fvb5-3 - View
Fragaria x ananassa FAN13G0549 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Fvb5-2 + View
Fragaria x ananassa FAN22G1661 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 Fvb4-1 + View
Fragaria x ananassa FAN18G2916 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Fvb5-1 + View
Fragaria vesca FvH4_5g13341 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 Fvb5 + View
Gossypium hirsutum Gohir.A12G159200 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 A12 + View
Gossypium hirsutum Gohir.A11G034400 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 A11 - View
Gossypium hirsutum Gohir.D13G085900 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 D13 - View
Gossypium hirsutum Gohir.D12G162500 PTHR12565//PTHR12565:SF123 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM2 D12 + View
Gossypium hirsutum Gohir.A09G244000 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 A09 - View
Gossypium hirsutum Gohir.D09G244900 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 D09 - View
Gossypium hirsutum Gohir.D11G037900 KOG0561 - bHLH transcription factor D11 - View
Glycine max Glyma.05G017800 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Gm05 + View
Glycine max Glyma.17G082100 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Gm17 - View
Gossypium raimondii Gorai.006G269200 Chr06 - View
Gossypium raimondii Gorai.007G040600 Chr07 - View
Gossypium raimondii Gorai.008G175100 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0595F.1_g186220 Hma1.2p1_0595F.1 + View
Hydrangea macrophylla Hma1.2p1_0060F.1_g032680 Hma1.2p1_0060F.1 + View
Lupinus albus Lalb_Chr13g0302651 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 Lalb_Chr13 + View
Lupinus albus Lalb_Chr17g0341501 PTHR12565:SF123 - TRANSCRIPTION FACTOR BIM2 Lalb_Chr17 - View
Lupinus albus Lalb_Chr12g0197401 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Lalb_Chr12 - View
Lupinus albus Lalb_Chr07g0178441 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Lalb_Chr07 - View
Lotus japonicus Lj4g0006918 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 chr4 + View
Lonicera japonica Lj3A1026T82 GWHAAZE00000003 + View
Lonicera japonica Lj9C437T9 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_1_14940 Lsat_1_v8_lg_1 - View
Malus domestica MD14G1217100 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Chr14 - View
Malus domestica MD16G1055100 BES1-interacting Myc-like protein 2 Chr16 + View
Malus domestica MD06G1206200 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Chr06 - View
Manihot esculenta Manes.14G089600 Chromosome14 - View
Medicago truncatula Medtr4g110040 transcription factor BIM2-like protein chr4 - View
Nelumbo nucifera Nn4g23548 chr4 - View
Nicotiana tabacum Nitab4.5_0004190g0040 Myc-type, basic helix-loop-helix (bHLH) domain Nitab4.5_0004190 + View
Nicotiana tabacum Nitab4.5_0002449g0130 Myc-type, basic helix-loop-helix (bHLH) domain Nitab4.5_0002449 - View
Olea europaea Oeu057227.2 chr23 + View
Olea europaea Oeu031932.1 chr10 + View
Petunia axillaris Peaxi162Scf00017g03268 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Peaxi162Scf00017 + View
Petunia axillaris Peaxi162Scf00013g00838 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Peaxi162Scf00013 - View
Punica granatum PGR083G0040 NC_045133.1 - View
Prunus persica Prupe.1G294200 Pp01 - View
Prunus persica Prupe.5G210500 Pp05 - View
Papaver somniferum PSO782G2663 NC_039365.1 - View
Populus trichocarpa Potri.015G048000 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Chr15 + View
Populus trichocarpa Potri.012G065000 PTHR12565:SF153 - TRANSCRIPTION FACTOR BIM1 Chr12 + View
Phaseolus vulgaris Phvul.003G181900 Chr03 + View
Quercus lobata QL10p020993 10 - View
Rosa chinensis RcHm_v2.0_Chr7g0183781 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim08G0142600 chr08 - View
Rhododendron simsii Rhsim08G0077900 chr08 - View
Striga asiatica SGA_v2.0_scaffold36G14494 scaffold36 - View
Salix brachista Sabra15G0079100 GWHAAZH00000015 - View
Salix brachista Sabra04G0072000 GWHAAZH00000004 + View
Simmondsia chinensis Sc12g0006860 GWHAASQ00000012 + View
Simmondsia chinensis Sc04g0007320 GWHAASQ00000004 + View
Sechium edule Sed0008386 LG01 + View
Sechium edule Sed0006842 LG08 - View
Sechium edule Sed0006502 LG12 - View
Solanum lycopersicum Solyc04g005280.4 bHLH transcription factor 028 SL4.0ch04 + View
Solanum lycopersicum Solyc03g114720.3 bHLH transcription factor 023 SL4.0ch03 + View
Solanum lycopersicum Solyc06g069370.4 bHLH transcription factor 046 SL4.0ch06 + View
Schrenkiella parvula Sp2g24120 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 ch2-4 - View
Schrenkiella parvula Sp6g34830 PTHR12565//PTHR12565:SF153 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BIM1 ch6-6 + View
Solanum tuberosum PGSC0003DMG400004061 Transcription factor BIM1 ST4.03ch06 + View
Solanum tuberosum PGSC0003DMG400024523 Transcription factor BIM1 ST4.03ch03 + View
Selenicereus undatus Hund05817 Scaffold_19641 + View
Selenicereus undatus Hund25152 Scaffold_3410 + View
Selenicereus undatus Hund09966 Scaffold_10417 - View
Selenicereus undatus Hund02542 Scaffold_33678 + View
Theobroma cacao Thecc.02G321700 BES1-interacting Myc-like protein 2 Chromosome_2 + View
Theobroma cacao Thecc.03G109700 Transcription factor BIM1 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104801016 transcription factor BIM1-like isoform X1 NW_010960188.1 + View
Tarenaya hassleriana THA.LOC104818360 transcription factor BIM1 isoform X1 NW_010966092.1 - View
Trifolium pratense TPR.G1979 Tp57577_TGAC_v2_LG5 + View
Tripterygium wilfordii TWI60G0216 NC_052246.1 + View
Tripterygium wilfordii TWI34G1427 NC_052235.1 + View
Vaccinium macrocarpon vmacro17659 Similar to BIM2: Transcription factor BIM2 (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1215G1907 CM024074.1 - View
Vitis vinifera GSVIVG01008164001 chr17 + View