Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen11g021170 Pentatricopeptide repeat (PPR) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein Spenn-ch11 - View
Sopen03g023970 Pentatricopeptide repeat (PPR-like) superfamily protein | CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat | BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 Spenn-ch03 + View
Sopen05g012900 Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. | breast cancer associated RING 1 (BARD1) | FUNCTIONS IN: transcription coactivator activity, DNA binding | INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development | LOCATED IN: intracellular | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site , Zinc finger, RING-type , Zinc finger, PHD-type , BRCT | BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 Spenn-ch05 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia28441 Lachesis_group16 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.X21LXD arahy.Tifrunner.gnm1.Arahy.13 + View
Camellia sinensis var. sinensis CSS0045524 Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1 [Theobroma cacao] Chr2 + View
Camellia sinensis var. sinensis CSS0038084 PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Pyrus x bretschneideri] Chr1 + View
Coffea canephora Cc09_g03570 Putative Pentatricopeptide repeat-containing protein At2g22070 chr9 + View
Chenopodium quinoa AUR62000315 PCMP-H32: Putative pentatricopeptide repeat-containing protein At3g23330 C_Quinoa_Scaffold_2088 - View
Erigeron canadensis ECA247G2265 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA232G3249 Conyza_canadensis_scaffold:2 - View
Fragaria x ananassa FAN02G0720 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-4 - View
Fragaria x ananassa FAN23G1036 PF13041 - PPR repeat family (PPR_2) Fvb1-3 + View
Fragaria x ananassa FAN05G3448 PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Fvb6-3 + View
Fragaria x ananassa FAN28G2152 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb1-1 - View
Fragaria vesca FvH4_1g23230 PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Fvb1 + View
Hydrangea macrophylla Hma1.2p1_0375F.1_g138880 Hma1.2p1_0375F.1 + View
Magnolia biondii MBI09_g34416_MAGBIO AED:0.18 Chr09 + View
Magnolia biondii MBI05_g35464_MAGBIO AED:0.39 Chr05 + View
Malus domestica MD04G1244800 Tetratricopeptide repeat (TPR)-like superfamily protein Chr04 - View
Nelumbo nucifera Nn1g05154 chr1 - View
Papaver somniferum PSO170G3097 NC_039360.1 - View
Papaver somniferum PSO675G7910 NC_039358.1 + View
Quercus lobata QL01p048565 1 + View
Rosa chinensis RcHm_v2.0_Chr2g0118001 RcHm_v2.0_Chr2 + View
Striga asiatica SGA_v2.0_scaffold34G13643 scaffold34 + View
Salvia bowleyana SalBow5G0388 GWHASIU00000003 - View
Solanum lycopersicum Solyc04g051480.1 Pentatricopeptide repeat (AHRD V3.3 *** A0A200PQ84_9MAGN) SL4.0ch04 - View
Solanum tuberosum PGSC0003DMG400019703 PpPPR_98 protein ST4.03ch04 + View
Trochodendron aralioides TAR628G0925 group5 + View
Trochodendron aralioides TAR625G1265 group4 - View
Theobroma cacao Thecc.05G206300 Pentatricopeptide repeat superfamily protein Chromosome_5 - View
Trifolium pratense TPR.G281 Tp57577_TGAC_v2_LG3 - View
Vaccinium macrocarpon vmacro18646 Similar to DOT4: Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Arabidopsis thaliana OX%3D3702) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01019116001 chr4 + View