Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen07g027660 Nucleic acid-binding, OB-fold-like protein | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: biological_process unknown | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like , Nucleic acid-binding, OB-fold | BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein Spenn-ch07 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G13730 LG-9 + View
Acer truncatum Atru.chr6.2878 chr6 - View
Actinidia chinensis Actinidia39476 Contig02222_ERROPOS572048 + View
Actinidia chinensis Actinidia05653 Lachesis_group20 + View
Actinidia chinensis Actinidia26139 Lachesis_group17 + View
Actinidia chinensis Actinidia16568 Lachesis_group0 + View
Actinidia chinensis Actinidia07599 Lachesis_group6 - View
Arabidopsis lyrata AL1G13370 scaffold_1 + View
Arabidopsis lyrata AL4G29630 scaffold_4 + View
Avicennia marina MSTRG.7354 ScioBoG_102840_HRSCAF_103099 + View
Avicennia marina MSTRG.14709 ScioBoG_18782_HRSCAF_18867 + View
Avicennia marina MSTRG.15856 ScioBoG_19538_HRSCAF_19626 - View
Amaranthus hybridus Ah.01g004060 Uncharacterized protein At4g28440 AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy4G00668 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H2P1IF K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZB2C9Z K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.SB8ID5 K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.10 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.2UYJ4Z KOG3416 - Predicted nucleic acid binding protein arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1SZ2FT K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.W02GTP K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.YQM1P4 K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PMQ43S K07466 - replication factor A1 (RFA1, RPA1, rpa) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT2G33845 Nucleic acid-binding, OB-fold-like protein Nucleic acid-binding%2C OB-fold-like protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 22 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT4G28440.1)%3B Has 251 Blast hits to 251 proteins in 51 species: Archae - 23%3B Bacteria - 0%3B Metazoa - 2%3B Fungi - 4%3B Plants - 168%3B Viruses - 30%3B Other Eukaryotes - 24 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT4G28440 Nucleic acid-binding, OB-fold-like protein Nucleic acid-binding%2C OB-fold-like protein%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT2G33845.1)%3B Has 214 Blast hits to 214 proteins in 47 species: Archae - 22%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 25 (source: NCBI BLink). Chr4 + View
Arabidopsis thaliana AT1G03810 Nucleic acid-binding, OB-fold-like protein Nucleic acid-binding%2C OB-fold-like protein%3B CONTAINS InterPro DOMAIN/s: Nucleic acid-binding%2C OB-fold-like (InterPro:IPR016027)%2C Nucleic acid-binding%2C OB-fold (InterPro:IPR012340)%3B BEST Arabidopsis thaliana protein match is: Nucleic acid-binding%2C OB-fold-like protein (TAIR:AT4G28440.1)%3B Has 209 Blast hits to 209 proteins in 44 species: Archae - 18%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 167%3B Viruses - 0%3B Other Eukaryotes - 24 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g10599 ChrB02 + View
Brassica carinata BcaC09g51646 ChrC09 + View
Brassica napus C04p63400 C04 + View
Brassica napus A05p11720 A05 - View
Brassica oleracea BolC4t27815H C4 + View
Brassica rapa BraA05t20117Z A05 - View
Beta vulgaris EL10Ac9g20808 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr9_EL10_PGA_scaffold8 + View
Camellia sinensis var. sinensis CSS0025519 PREDICTED: uncharacterized protein At4g28440-like [Sesamum indicum] Chr8 + View
Camellia sinensis var. sinensis CSS0049707 PREDICTED: uncharacterized protein At4g28440-like [Sesamum indicum] Chr8 + View
Capsicum annuum CAN.G529.49 PGAv.1.6.scaffold529 + View
Cannabis sativa CANSAT64G0132 NC_044379.1 - View
Cicer arietinum L. Ca_01485_v3 Ca_LG1_v3 - View
Cicer arietinum L. Ca_00356_v3 Ca_LG1_v3 + View
Corylus avellana Haze_06384 Similar to At4g28440: Uncharacterized protein At4g28440 (Arabidopsis thaliana OX%3D3702) 2 - View
Corylus avellana Haze_13232 Similar to At4g28440: Uncharacterized protein At4g28440 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc05_g07630 Uncharacterized protein At4g28440 chr5 + View
Coffea canephora Cc05_g11690 Uncharacterized protein At4g28440 chr5 - View
Coffea canephora Cc02_g13740 Uncharacterized protein At4g28440 chr2 + View
Citrus clementina Ciclev10017101m.g scaffold_2 - View
Citrus clementina Ciclev10017022m.g scaffold_2 + View
Ceratophyllum demersum CDE02G4095 1 + View
Carpinus fangiana Cfa000521 Cfa01 + View
Carpinus fangiana Cfa014655 Cfa06 + View
Cardamine hirsuta CARHR127970 Nucleic acid-binding, OB-fold-like protein Chr4 + View
Cardamine hirsuta CARHR236210 Nucleic acid-binding, OB-fold-like protein Chr7 + View
Cardamine hirsuta CARHR003140 Nucleic acid-binding, OB-fold-like protein Chr1 + View
Carya illinoinensis CiPaw.03G180800 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr03 + View
Carya illinoinensis CiPaw.09G063000 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr09 + View
Citrullus lanatus ClCG11G017760 Nucleic acid-binding, OB-fold-like protein LENGTH=182 CG_Chr11 - View
Cucumis melo MELO3C018870.2 Nucleic acid-binding, OB-fold-like protein chr01 - View
Corchorus olitorius COL.COLO4_31425 Nucleic acid-binding protein AWUE01020854.1 - View
Carica papaya Cpa.g.sc27.11 supercontig_27 - View
Carica papaya Cpa.g.sc83.85 supercontig_83 + View
Capsella rubella Carub.0004s1553 KOG3416 - Predicted nucleic acid binding protein scaffold_4 + View
Capsella rubella Carub.0001s0293 K07466 - replication factor A1 (RFA1, RPA1, rpa) scaffold_1 + View
Cucumis sativus L. CsaV3_4G033400 Nucleic acid-binding, OB-fold containing protein chr4 - View
Cucumis sativus L. CsaV3_7G003050 Nucleic acid-binding, OB-fold containing protein chr7 + View
Daucus carota DCAR_004051 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_008009 hypothetical protein DCARv2_Chr2 - View
Davidia involucrata Dinv14942 GWHABJS00000001 - View
Davidia involucrata Dinv20208 GWHABJS00000013 + View
Davidia involucrata Dinv40596 GWHABJS00000275 + View
Davidia involucrata Dinv06864 GWHABJS00000013 + View
Durio zibethinus Duzib192G0637 NW_019168037.1 + View
Durio zibethinus Duzib160G0704 NW_019168015.1 - View
Durio zibethinus Duzib132G0171 NW_019167915.1 - View
Durio zibethinus Duzib235G1214 NW_019167982.1 - View
Erigeron canadensis ECA234G4433 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.A01855 Chr01 + View
Eucalyptus grandis Eucgr.F01173 Chr06 + View
Erythranthe guttata Migut.H01475 scaffold_8 - View
Erythranthe guttata Migut.M01113 scaffold_13 - View
Eutrema salsugineum Thhalv10009070m.g K07466 - replication factor A1 (RFA1, RPA1, rpa) scaffold_5 - View
Eutrema salsugineum Thhalv10017314m.g KOG3416 - Predicted nucleic acid binding protein scaffold_10 + View
Fragaria x ananassa FAN16G2776 KOG3416 - Predicted nucleic acid binding protein Fvb3-3 - View
Gossypium hirsutum Gohir.D06G209700 K07466 - replication factor A1 (RFA1, RPA1, rpa) D06 - View
Gossypium hirsutum Gohir.D05G162200 KOG3416 - Predicted nucleic acid binding protein D05 - View
Gossypium hirsutum Gohir.A06G211500 K07466 - replication factor A1 (RFA1, RPA1, rpa) A06 - View
Gossypium hirsutum Gohir.A05G159500 KOG3416 - Predicted nucleic acid binding protein A05 - View
Glycine max Glyma.13G294700 K07466 - replication factor A1 (RFA1, RPA1, rpa) Gm13 - View
Glycine max Glyma.13G236400 K07466 - replication factor A1 (RFA1, RPA1, rpa) Gm13 - View
Glycine max Glyma.07G200900 KOG3416 - Predicted nucleic acid binding protein Gm07 + View
Glycine max Glyma.12G206200 K07466 - replication factor A1 (RFA1, RPA1, rpa) Gm12 + View
Glycine max Glyma.15G077300 K07466 - replication factor A1 (RFA1, RPA1, rpa) Gm15 + View
Glycine max Glyma.13G175500 K07466 - replication factor A1 (RFA1, RPA1, rpa) Gm13 - View
Gossypium raimondii Gorai.010G256800 Chr10 + View
Gossypium raimondii Gorai.009G167200 Chr09 - View
Hydrangea macrophylla Hma1.2p1_0002F.1_g002180 Hma1.2p1_0002F.1 + View
Hydrangea macrophylla Hma1.2p1_0558F.1_g178570 Hma1.2p1_0558F.1 - View
Lupinus albus Lalb_Chr20g0121611 K07466 - replication factor A1 (RFA1, RPA1, rpa) Lalb_Chr20 - View
Lupinus albus Lalb_Chr15g0089701 K07466 - replication factor A1 (RFA1, RPA1, rpa) Lalb_Chr15 - View
Lupinus albus Lalb_Chr19g0135141 K07466 - replication factor A1 (RFA1, RPA1, rpa) Lalb_Chr19 - View
Lotus japonicus Lj4g0005883 K07466 - replication factor A1 (RFA1, RPA1, rpa) chr4 - View
Lotus japonicus Lj6g0020371 K07466 - replication factor A1 (RFA1, RPA1, rpa) chr6 - View
Lotus japonicus Lj3g0019868 K07466 - replication factor A1 (RFA1, RPA1, rpa) chr3 - View
Lonicera japonica Lj1A838G28 GWHAAZE00000001 - View
Lonicera japonica Lj2A292T25 GWHAAZE00000002 + View
Lonicera japonica Lj8A108T64 GWHAAZE00000008 - View
Lactuca sativa Lsat_1_v5_gn_7_22660 K07466 - replication factor A1 (RFA1, RPA1, rpa) Lsat_1_v8_lg_7 + View
Lactuca sativa Lsat_1_v5_gn_4_51921 K07466 - replication factor A1 (RFA1, RPA1, rpa) Lsat_1_v8_lg_4 - View
Magnolia biondii MBI06_g06465_MAGBIO AED:0.03 Chr06 + View
Magnolia biondii MBI07_g29114_MAGBIO AED:0.11 Chr07 + View
Malus domestica MD09G1242500 Nucleic acid-binding Chr09 - View
Malus domestica MD11G1255600 Nucleic acid-binding Chr11 + View
Malus domestica MD03G1235100 Nucleic acid-binding Chr03 + View
Manihot esculenta Manes.17G048700 Chromosome17 + View
Manihot esculenta Manes.13G142800 Chromosome13 - View
Medicago truncatula Medtr2g090635 nucleic acid-binding, OB-fold-like protein chr2 + View
Medicago truncatula Medtr2g014360 nucleic acid-binding, OB-fold-like protein chr2 + View
Nelumbo nucifera Nn1g04220 chr1 + View
Nelumbo nucifera Nn1g06428 chr1 - View
Nicotiana tabacum Nitab4.5_0002813g0040 Nucleic acid-binding, OB-fold Nitab4.5_0002813 + View
Olea europaea Oeu064799.1 scaffold994 + View
Oryza sativa ssp. japonica Os01g0238600 Nucleic acid-binding, OB-fold domain containing protein. chr01 + View
Petunia axillaris Peaxi162Scf00926g00519 Nucleic acid-binding, OB-fold-like protein Peaxi162Scf00926 - View
Petunia axillaris Peaxi162Scf00845g00224 Nucleic acid-binding, OB-fold-like protein Peaxi162Scf00845 - View
Punica granatum PGR083G1856 NC_045133.1 + View
Punica granatum PGR042G0817 NC_045130.1 - View
Prunus persica Prupe.3G134500 K07466 - replication factor A1 (RFA1, RPA1, rpa) Pp03 + View
Prunus persica Prupe.4G174100 K07466 - replication factor A1 (RFA1, RPA1, rpa) Pp04 - View
Pisum sativum Psat1g203240 Nucleic acid-binding + OB-fold-like chr1LG6 - View
Papaver somniferum PSO541G5187 NC_039363.1 + View
Papaver somniferum PSO210G4184 NC_039359.1 - View
Papaver somniferum PSO832G0788 NC_039367.1 + View
Populus trichocarpa Potri.001G396100 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr01 - View
Populus trichocarpa Potri.017G014400 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr17 + View
Populus trichocarpa Potri.011G114800 KOG3416 - Predicted nucleic acid binding protein Chr11 - View
Populus trichocarpa Potri.007G137600 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr07 - View
Phaseolus vulgaris Phvul.006G183000 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr06 - View
Phaseolus vulgaris Phvul.005G101100 K07466 - replication factor A1 (RFA1, RPA1, rpa) Chr05 - View
Quercus lobata QL08p039995 8 + View
Rhododendron simsii Rhsim06G0203000 chr06 + View
Rhododendron simsii Rhsim02G0133700 chr02 + View
Salix brachista Sabra16G0259200 GWHAAZH00000016 - View
Salix brachista Sabra17G0011600 GWHAAZH00000017 + View
Salix brachista Sabra11G0100800 GWHAAZH00000011 - View
Salix brachista Sabra07G0110500 GWHAAZH00000007 - View
Simmondsia chinensis Sc03g0010230 GWHAASQ00000003 + View
Simmondsia chinensis Sc12g0003200 GWHAASQ00000012 + View
Sechium edule Sed0001024 LG04 + View
Solanum lycopersicum Solyc02g077740.3 Nucleic acid-binding, OB-fold (AHRD V3.3 *-* A0A2U1QDH2_ARTAN) SL4.0ch02 - View
Solanum lycopersicum Solyc07g053690.3 Nucleic acid-binding, OB-fold (AHRD V3.3 *** A0A2U1KRH4_ARTAN) SL4.0ch07 - View
Schrenkiella parvula Sp7g26420 KOG3416 - Predicted nucleic acid binding protein ch7-5 + View
Schrenkiella parvula Sp4g16240 K07466 - replication factor A1 (RFA1, RPA1, rpa) ch4-6 + View
Schrenkiella parvula Sp1g24650 KOG3416 - Predicted nucleic acid binding protein ch1-1 + View
Solanum tuberosum PGSC0003DMG400009376 Conserved gene of unknown function ST4.03ch07 + View
Solanum tuberosum PGSC0003DMG400031749 OB-fold nucleic acid binding domain containing protein ST4.03ch02 - View
Selenicereus undatus Hund07913 Scaffold_33676 + View
Trochodendron aralioides TAR627G1180 group6 - View
Theobroma cacao Thecc.06G182000 Nucleic acid-binding Chromosome_6 - View
Theobroma cacao Thecc.02G185100 Nucleic acid-binding Chromosome_2 + View
Theobroma cacao Thecc.07G098400 Chromosome_7 + View
Tarenaya hassleriana THA.LOC104814227 uncharacterized protein At4g28440-like NW_010965451.1 + View
Tarenaya hassleriana THA.LOC104820565 uncharacterized protein At4g28440-like NW_010966274.1 + View
Trifolium pratense TPR.G6390 Tp57577_TGAC_v2_LG7 - View
Trifolium pratense TPR.G11766 Tp57577_TGAC_v2_LG4 - View
Tripterygium wilfordii TWI39G0895 NC_052250.1 + View
Tripterygium wilfordii TWI63G0360 NC_052240.1 + View
Tripterygium wilfordii TWI23G1299 NC_052239.1 - View
Tripterygium wilfordii TWI38G1524 NC_052252.1 + View
Vaccinium macrocarpon vmacro15926 Similar to At4g28440: Uncharacterized protein At4g28440 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro11893 Similar to At4g28440: Uncharacterized protein At4g28440 (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0540G0176 CM024075.1 + View
Vigna mungo VMungo1080G1701 CM024079.1 + View
Vanilla planifolia HPP92_023895 Nucleic acid-binding, OB-fold-like protein *** CM028162.1 - View
Vitis vinifera GSVIVG01021104001 chr10 + View
Vitis vinifera GSVIVG01020596001 chr12 - View