Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sed0004276 LG04 + View
Sed0012639 LG10 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G16800 LG-3 - View
Acer truncatum Atru.chr13.1110 chr13 - View
Acer truncatum Atru.chr3.1337 chr3 - View
Actinidia chinensis Actinidia01863 Lachesis_group11 - View
Actinidia chinensis Actinidia28037 Lachesis_group16 + View
Arabidopsis lyrata AL6G20880 scaffold_6 + View
Avicennia marina MSTRG.15706 ScioBoG_19538_HRSCAF_19626 - View
Avicennia marina MSTRG.3753 ScioBoG_102836_HRSCAF_103072 - View
Aquilegia oxysepala Aqoxy6G00699 CHR06 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WBD5UZ PF00560//PF08263//PF13639//PF13855 - Leucine Rich Repeat (LRR_1) // Leucine rich repeat N-terminal domain (LRRNT_2) // Ring finger domain (zf-RING_2) // Leucine rich repeat (LRR_8) arahy.Tifrunner.gnm1.Arahy.20 - View
Arabidopsis thaliana AT5G10380 RING/U-box superfamily protein Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators. RING1%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C Zinc finger%2C C3HC4 RING-type (InterPro:IPR018957)%3B BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Brassica carinata BcaB08g37112 ChrB08 - View
Brassica carinata BcaC04g19308 ChrC04 - View
Brassica napus A10p27220 A10 - View
Brassica oleracea BolC9t59476H C9 - View
Brassica rapa BraA10t44772Z A10 - View
Beta vulgaris EL10Ac6g14811 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr6_EL10_PGA_scaffold0 - View
Camellia sinensis var. sinensis CSS0001119 PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera] Chr4 - View
Camellia sinensis var. sinensis CSS0014171 unnamed protein product [Coffea canephora] Chr1 - View
Cannabis sativa CANSAT01G0420 NC_044373.1 + View
Coffea canephora Cc10_g06590 Ring finger protein, putative chr10 - View
Coffea canephora Cc07_g14510 Putative uncharacterized protein chr7 - View
Citrus clementina Ciclev10025698m.g scaffold_7 - View
Citrus clementina Ciclev10001098m.g scaffold_5 - View
Ceratophyllum demersum CDE03G0406 12 - View
Ceratophyllum demersum CDE06G2580 4 + View
Cardamine hirsuta CARHR202920 Ring finger protein, putative Chr6 - View
Citrullus lanatus ClCG01G018570 Ring finger protein, putative CG_Chr01 - View
Citrullus lanatus ClCG08G011350 Ring finger protein, putative CG_Chr08 + View
Cucumis melo MELO3C011051.2 RING-H2 finger protein ATL54-like chr03 - View
Cucumis melo MELO3C007735.2 E3 ubiquitin-protein ligase RING1 chr08 - View
Carica papaya Cpa.g.sc55.65 supercontig_55 - View
Chenopodium quinoa AUR62018981 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_3876 + View
Chenopodium quinoa AUR62027198 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_2924 - View
Chenopodium quinoa AUR62027822 ATL54: RING-H2 finger protein ATL54 C_Quinoa_Scaffold_3784 + View
Capsella rubella Carub.0006s0885 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED scaffold_6 + View
Cucumis sativus L. CsaV3_6G045220 RING-H2 finger protein chr6 - View
Cucumis sativus L. CsaV3_2G029930 RING-H2 finger protein ATL54-like chr2 + View
Davidia involucrata Dinv08872 GWHABJS00000021 - View
Davidia involucrata Dinv44812 GWHABJS00000002 + View
Davidia involucrata Dinv13240 GWHABJS00000014 - View
Durio zibethinus Duzib147G0707 NW_019168470.1 + View
Durio zibethinus Duzib187G0211 NW_019167860.1 + View
Durio zibethinus Duzib093G1162 NW_019167937.1 + View
Durio zibethinus Duzib052G1244 NW_019167849.1 - View
Durio zibethinus Duzib041G0657 NW_019167826.1 - View
Eucalyptus grandis Eucgr.B00047 Chr06 - View
Eucalyptus grandis Eucgr.F00383 Chr06 - View
Eucalyptus grandis Eucgr.H04739 Chr08 - View
Eutrema salsugineum Thhalv10015812m.g PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED scaffold_2 + View
Fragaria x ananassa FAN19G0666 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb1-4 - View
Fragaria x ananassa FAN28G1256 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-1 + View
Fragaria x ananassa FAN23G1114 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-3 - View
Fragaria x ananassa FAN26G2743 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Fvb1-2 - View
Fragaria x ananassa FAN04G3046 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb5-4 - View
Fragaria x ananassa FAN22G1312 PTHR14155:SF78 - RING-H2 FINGER PROTEIN ATL43 Fvb4-1 + View
Fragaria vesca FvH4_1g20164 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Fvb1 - View
Gossypium hirsutum Gohir.A05G222900 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED A05 - View
Gossypium hirsutum Gohir.D12G081900 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED D12 + View
Gossypium hirsutum Gohir.A12G084000 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED A12 - View
Gossypium hirsutum Gohir.D05G225600 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED D05 - View
Glycine max Glyma.08G070100 PTHR14155//PTHR14155:SF101 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Gm08 - View
Gossypium raimondii Gorai.009G233100 Chr09 - View
Gossypium raimondii Gorai.008G091200 Chr08 + View
Lupinus albus Lalb_Chr17g0344321 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Lalb_Chr17 + View
Lonicera japonica Lj4A729T42 GWHAAZE00000004 + View
Lonicera japonica Lj4P279T8 GWHAAZE00000004 - View
Lactuca sativa Lsat_1_v5_gn_2_65961 K10664 - E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:6.3.2.19] (ATL6S) Lsat_1_v8_lg_2 + View
Magnolia biondii MBI06_g03313_MAGBIO AED:0.03 Chr06 + View
Magnolia biondii MBI02_g20472_MAGBIO AED:0.22 Chr02 + View
Malus domestica MD08G1190400 RING/U-box superfamily protein Chr08 + View
Malus domestica MD01G1036900 RING/U-box superfamily protein Chr01 + View
Malus domestica MD15G1317400 RING/U-box superfamily protein Chr15 - View
Malus domestica MD15G1377700 RING/U-box superfamily protein Chr15 + View
Manihot esculenta Manes.13G097400 Chromosome13 + View
Manihot esculenta Manes.12G129600 Chromosome12 - View
Manihot esculenta Manes.10G103400 Chromosome10 - View
Manihot esculenta Manes.02G148600 Chromosome02 - View
Nelumbo nucifera Nn1g05473 chr1 + View
Nelumbo nucifera Nn5g29979 chr5 - View
Olea europaea Oeu000876.1 chr10 + View
Olea europaea Oeu055124.1 scaffold686 - View
Olea europaea Oeu032370.1 chr20 + View
Prunus persica Prupe.1G524400 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Pp01 + View
Prunus persica Prupe.6G194300 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Pp06 + View
Pisum sativum Psat7g100520 Ring finger domain chr7LG7 + View
Populus trichocarpa Potri.002G101800 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr02 + View
Populus trichocarpa Potri.007G111900 PTHR14155//PTHR14155:SF94 - RING FINGER DOMAIN-CONTAINING // RING-H2 FINGER PROTEIN ATL33-RELATED Chr07 + View
Phaseolus vulgaris Phvul.002G260500 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr02 - View
Phaseolus vulgaris Phvul.008G177400 PTHR14155//PTHR14155:SF174 - RING FINGER DOMAIN-CONTAINING // SUBFAMILY NOT NAMED Chr08 + View
Phaseolus vulgaris Phvul.003G284600 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED Chr03 - View
Quercus lobata QL11p023242 11 + View
Quercus lobata QL06p047938 6 - View
Rosa chinensis RcHm_v2.0_Chr2g0112241 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim10G0169000 chr10 + View
Rhododendron simsii Rhsim06G0076900 chr06 - View
Salix brachista Sabra02G0079800 GWHAAZH00000002 + View
Simmondsia chinensis Sc16g0000330 GWHAASQ00000016 + View
Simmondsia chinensis Sc23g0000470 GWHAASQ00000023 + View
Solanum lycopersicum Solyc11g010330.3 RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH) SL4.0ch11 + View
Solanum lycopersicum Solyc04g014220.1 RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH) SL4.0ch04 + View
Solanum lycopersicum Solyc04g074790.3 RING/U-box superfamily protein (AHRD V3.3 *-* F4JJ02_ARATH) SL4.0ch04 + View
Solanum lycopersicum Solyc12g087840.1 RING/U-box superfamily protein (AHRD V3.3 *-* A0A2U1LC40_ARTAN) SL4.0ch12 + View
Schrenkiella parvula Sp6g33070 PTHR14155:SF94 - RING-H2 FINGER PROTEIN ATL33-RELATED ch6-6 - View
Solanum pennellii Sopen11g005110 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | INVOLVED IN: biological_process unknown | LOCATED IN: plasma membrane | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch11 + View
Solanum pennellii Sopen04g006320 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch04 + View
Solanum pennellii Sopen12g029870 RING/U-box superfamily protein | FUNCTIONS IN: zinc ion binding | EXPRESSED IN: inflorescence meristem, root, flower | EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type , Zinc finger, C3HC4 RING-type | BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein Spenn-ch12 + View
Solanum tuberosum PGSC0003DMG400016217 Ring finger protein ST4.03ch11 - View
Solanum tuberosum PGSC0003DMG400023634 Ring finger protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400030821 Ring finger protein ST4.03ch04 + View
Solanum tuberosum PGSC0003DMG400017761 Ring finger protein ST4.03ch12 + View
Trochodendron aralioides TAR376G0764 group14 + View
Trochodendron aralioides TAR625G0609 group4 + View
Trochodendron aralioides TAR628G0774 group5 + View
Theobroma cacao Thecc.01G094900 RING/U-box superfamily protein Chromosome_1 - View
Tarenaya hassleriana THA.LOC104798800 E3 ubiquitin-protein ligase RING1 NW_010960188.1 - View
Tripterygium wilfordii TWI53G0251 NC_052244.1 + View
Tripterygium wilfordii TWI56G0488 NC_052242.1 - View
Tripterygium wilfordii TWI12G1335 NC_052243.1 + View
Tripterygium wilfordii TWI74G1689 NC_052234.1 - View
Vaccinium macrocarpon vmacro21928 Similar to ATL54: RING-H2 finger protein ATL54 (Arabidopsis thaliana OX%3D3702) chr10_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01009096001 chr18 + View
Zea mays Zm00001eb315620 Zm00001e034423 RING-H2 finger protein ATL5F 7 - View