Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold186G40192 scaffold186 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G1480 LG-4 + View
Acer truncatum Atru.chr1.80 chr1 - View
Actinidia chinensis Actinidia12762 Lachesis_group19 + View
Arabidopsis lyrata AL1G28420 scaffold_1 + View
Avicennia marina MSTRG.14560 ScioBoG_18782_HRSCAF_18867 - View
Avicennia marina MSTRG.16096 ScioBoG_19538_HRSCAF_19626 - View
Arabidopsis thaliana AT1G79530 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development%2C dwarfism and sterility. GAPCps are important for the synthesis of serine in roots. glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (GAPCP-1)%3B FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity%2C copper ion binding%2C glyceraldehyde-3-phosphate dehydrogenase activity%2C zinc ion binding%3B INVOLVED IN: in 6 processes%3B LOCATED IN: plastid%2C membrane%3B EXPRESSED IN: guard cell%2C leaf%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (TAIR:AT1G16300.1)%3B Has 25337 Blast hits to 25325 proteins in 6357 species: Archae - 82%3B Bacteria - 10921%3B Metazoa - 2380%3B Fungi - 2852%3B Plants - 3837%3B Viruses - 0%3B Other Eukaryotes - 5265 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G16300 glyceraldehyde-3-phosphate dehydrogenase of plastid 2 Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development%2C dwarfism and sterility. GAPCps are important for the synthesis of serine in roots. glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2)%3B CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain (InterPro:IPR020829)%2C Glyceraldehyde-3-phosphate dehydrogenase%2C type I (InterPro:IPR006424)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C catalytic domain%2C subgroup (InterPro:IPR020832)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C active site (InterPro:IPR020830)%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NAD(P) binding domain (InterPro:IPR020828)%3B BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (TAIR:AT1G79530.1)%3B Has 25238 Blast hits to 25227 proteins in 6343 species: Archae - 51%3B Bacteria - 10898%3B Metazoa - 2382%3B Fungi - 2852%3B Plants - 3834%3B Viruses - 0%3B Other Eukaryotes - 5221 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g07221 ChrB02 - View
Brassica carinata BcaC08g45349 ChrC08 + View
Brassica carinata BcaC05g25586 ChrC05 - View
Brassica napus C06p29840 C06 + View
Brassica napus A07p27090 A07 + View
Brassica napus C05p14460 C05 + View
Brassica napus A06p12220 A06 + View
Brassica napus C02p36690 C02 - View
Brassica oleracea BolC6t38145H C6 + View
Brassica rapa BraA02t07288Z A02 - View
Brassica rapa BraA06t24390Z A06 + View
Camellia sinensis var. sinensis CSS0000856 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like [Nelumbo nucifera] Chr7 - View
Camellia sinensis var. sinensis CSS0027832 PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like [Sesamum indicum] Chr5 - View
Capsicum annuum CAN.G492.79 PGAv.1.6.scaffold492 + View
Corylus avellana Haze_07787 Similar to GAPCP2: Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic (Arabidopsis thaliana OX%3D3702) 4 - View
Coffea canephora Cc05_g16480 Glyceraldehyde-3-phosphate dehydrogenase, cytosolic chr5 + View
Citrus clementina Ciclev10005029m.g scaffold_9 - View
Carpinus fangiana Cfa019389 Cfa08 - View
Cardamine hirsuta CARHR073200 Glyceraldehyde 3-phosphate dehydrogenase Chr2 - View
Cardamine hirsuta CARHR016770 Glyceraldehyde 3-phosphate dehydrogenase Chr1 + View
Carya illinoinensis CiPaw.11G059600 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Chr11 - View
Citrullus lanatus ClCG09G022760 Glyceraldehyde 3-phosphate dehydrogenase, putative CG_Chr09 + View
Citrullus lanatus ClCG02G018680 Glyceraldehyde 3-phosphate dehydrogenase 1 family protein CG_Chr02 + View
Cucumis melo MELO3C019633.2 Glyceraldehyde-3-phosphate dehydrogenase chr11 + View
Cucumis melo MELO3C012599.2 Glyceraldehyde-3-phosphate dehydrogenase chr01 - View
Carica papaya Cpa.g.sc32.53 supercontig_32 - View
Capsella rubella Carub.0002s2639 K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) scaffold_2 - View
Capsella rubella Carub.0001s1604 K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) scaffold_1 + View
Cucumis sativus L. CsaV3_6G013490 Glyceraldehyde-3-phosphate dehydrogenase chr6 - View
Cucumis sativus L. CsaV3_7G022960 Glyceraldehyde-3-phosphate dehydrogenase chr7 + View
Daucus carota DCAR_019913 hypothetical protein DCARv2_Chr6 + View
Davidia involucrata Dinv19581 GWHABJS00000001 + View
Davidia involucrata Dinv42471 GWHABJS00000013 - View
Erigeron canadensis ECA236G1639 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.F04466 Chr06 + View
Erythranthe guttata Migut.M01518 scaffold_13 - View
Erythranthe guttata Migut.H01664 scaffold_8 - View
Eutrema salsugineum Thhalv10007716m.g PTHR10836:SF41 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED scaffold_5 - View
Eutrema salsugineum Thhalv10018604m.g PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED scaffold_9 + View
Fragaria x ananassa FAN11G3495 PTHR10836:SF41 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED Fvb3-4 + View
Fragaria x ananassa FAN21G0624 PTHR10836:SF41 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED Fvb3-2 - View
Fragaria x ananassa FAN16G1820 PTHR10836//PTHR10836:SF41 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED Fvb3-3 - View
Fragaria vesca FvH4_3g14640 PTHR10836//PTHR10836:SF41 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED Fvb3 - View
Gossypium hirsutum Gohir.D13G129400 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED D13 + View
Gossypium hirsutum Gohir.A01G098600 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED A01 - View
Gossypium hirsutum Gohir.A13G125600 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED A13 + View
Gossypium raimondii Gorai.002G108700 Chr02 - View
Gossypium raimondii Gorai.013G145400 Chr13 + View
Hydrangea macrophylla Hma1.2p1_0334F.1_g128490 Hma1.2p1_0334F.1 - View
Lupinus albus Lalb_Chr25g0284501 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Lalb_Chr25 - View
Lotus japonicus Lj3g0007601 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED chr3 + View
Lonicera japonica Lj2C12T18 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_4_64540 K05298 - glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) (GAPA) Lsat_1_v8_lg_4 - View
Magnolia biondii MBI18_g20608_MAGBIO AED:0.18 Chr18 + View
Malus domestica MD10G1210900 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Chr10 + View
Malus domestica MD05G1234400 glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Chr05 + View
Manihot esculenta Manes.06G176700 Chromosome06 + View
Nicotiana tabacum Nitab4.5_0000029g0280 Glyceraldehyde/Erythrose phosphate dehydrogenase family Nitab4.5_0000029 - View
Olea europaea Oeu019718.2 chr6 - View
Oryza sativa ssp. japonica Os06g0666600 Similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 (EC 1.2.1.12). chr06 - View
Petunia axillaris Peaxi162Scf00452g00210 glyceraldehyde-3-phosphate dehydrogenase C2 Peaxi162Scf00452 - View
Punica granatum PGR031G2866 NC_045127.1 - View
Prunus persica Prupe.4G131700 PTHR10836:SF41 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC-RELATED Pp04 - View
Populus trichocarpa Potri.010G172400 K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Chr10 + View
Populus trichocarpa Potri.008G083900 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Chr08 - View
Rosa chinensis RcHm_v2.0_Chr5g0024101 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim04G0003100 chr04 + View
Rhododendron simsii Rhsim06G0243000 chr06 + View
Salvia bowleyana SalBow8G2782 GWHASIU00000004 + View
Salix brachista Sabra08G0062200 GWHAAZH00000008 - View
Salix brachista Sabra10G0131600 GWHAAZH00000010 + View
Sechium edule Sed0009028 LG05 + View
Sechium edule Sed0017423 LG05 - View
Solanum lycopersicum Solyc10g005510.3 Glyceraldehyde-3-phosphate dehydrogenase (AHRD V3.3 *** A0A2G3BCA8_CAPCH) SL4.0ch10 - View
Schrenkiella parvula Sp1g14490 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED ch1-1 + View
Schrenkiella parvula Sp5g34590 PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED ch5-7 - View
Solanum pennellii Sopen10g001490 Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots. | glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2) | CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily , Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain , Glyceraldehyde-3-phosphate dehydrogenase, type I , Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup , Glyceraldehyde 3-phosphate dehydrogenase, active site , Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain | BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 Spenn-ch10 - View
Tarenaya hassleriana THA.LOC104808134 glyceraldehyde-3-phosphate dehydrogenase GAPCP2%2C chloroplastic NW_010964598.1 + View
Tarenaya hassleriana THA.LOC104812377 glyceraldehyde-3-phosphate dehydrogenase GAPCP2%2C chloroplastic-like isoform X1 NW_010965372.1 + View
Tripterygium wilfordii TWI38G1731 NC_052252.1 - View
Tripterygium wilfordii TWI38G0531 NC_052252.1 + View
Utricularia gibba unitig_748.g7618 unitig_748 - View
Vaccinium macrocarpon vmacro11691 Similar to GAPCP2: Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic (Arabidopsis thaliana OX%3D3702) chr11_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro09769 Similar to GAPCP1: Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01036751001 chr19 + View