Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold85G26690 scaffold85 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G23020 LG-1 - View
Acer truncatum Atru.chr12.60 chr12 + View
Actinidia chinensis Actinidia34462 Lachesis_group15 - View
Actinidia chinensis Actinidia13943 Lachesis_group21 + View
Actinidia chinensis Actinidia29071 Lachesis_group3 - View
Actinidia chinensis Actinidia00954 Lachesis_group3 + View
Actinidia chinensis Actinidia11553 Lachesis_group21 - View
Actinidia chinensis Actinidia20761 Lachesis_group0 - View
Arabidopsis lyrata AL4G37860 scaffold_4 + View
Arabidopsis lyrata AL4G24780 scaffold_4 + View
Arabidopsis lyrata AL6G10430 scaffold_6 - View
Avicennia marina MSTRG.10214 ScioBoG_13798_HRSCAF_13862 - View
Avicennia marina MSTRG.5547 ScioBoG_102839_HRSCAF_103093 - View
Avicennia marina MSTRG.18978 ScioBoG_25048_HRSCAF_25167 - View
Amaranthus hybridus Ah.12g058770 AmaHy_arrow1_Scaffold_12 + View
Arabidopsis thaliana AT2G38320 TRICHOME BIREFRINGENCE-LIKE 34 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication). TRICHOME BIREFRINGENCE-LIKE 34 (TBL34)%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: endomembrane system%3B EXPRESSED IN: 20 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 35 (TAIR:AT5G01620.2)%3B Has 1346 Blast hits to 1317 proteins in 28 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 1%3B Fungi - 0%3B Plants - 1344%3B Viruses - 0%3B Other Eukaryotes - 1 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT2G40150 TRICHOME BIREFRINGENCE-LIKE 28 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members%2C two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose%2C presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff %26 Wolf Scheible%2C 2010%2C personal communication). TRICHOME BIREFRINGENCE-LIKE 28 (TBL28)%3B CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231%2C plant (InterPro:IPR004253)%3B BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1)%3B Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 1332%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr2 + View
Brassica carinata BcaB06g28335 ChrB06 + View
Brassica napus C03p00340 C03 - View
Brassica napus A04p29350 A04 + View
Brassica napus C03p25040 C03 + View
Brassica oleracea BolC3t14895H C3 + View
Brassica oleracea BolC3t12594H C3 + View
Brassica rapa BraA04t18402Z A04 + View
Brassica rapa BraA03t11355Z A03 + View
Camellia sinensis var. sinensis CSS0049115 PREDICTED: protein PMR5 [Vitis vinifera] Chr4 - View
Cicer arietinum L. Ca_07654_v3 Ca_LG3_v3 + View
Coffea canephora Cc01_g14410 Plant protein of unknown function (DUF828) chr1 + View
Coffea canephora Cc06_g00830 TRICHOME BIREFRINGENCE-LIKE 35 chr6 - View
Citrus clementina Ciclev10013527m.g scaffold_6 + View
Citrus clementina Ciclev10028623m.g scaffold_8 + View
Carpinus fangiana Cfa001306 Cfa01 - View
Cardamine hirsuta CARHR132890 TRICHOME BIREFRINGENCE-LIKE 34 Chr4 - View
Cardamine hirsuta CARHR211740 Protein trichome birefringence-like 33 Chr6 - View
Cardamine hirsuta CARHR135160 TRICHOME BIREFRINGENCE-LIKE 28 Chr4 + View
Carya illinoinensis CiPaw.09G211000 PTHR32285//PTHR32285:SF7//PTHR34966 - FAMILY NOT NAMED // PROTEIN TRICHOME BIREFRINGENCE-LIKE 3 // FAMILY NOT NAMED Chr09 + View
Carya illinoinensis CiPaw.02G193400 PTHR32285//PTHR32285:SF10 - FAMILY NOT NAMED // PROTEIN ESKIMO 1 Chr02 + View
Carya illinoinensis CiPaw.01G299900 PTHR32285:SF10 - PROTEIN ESKIMO 1 Chr01 + View
Citrullus lanatus ClCG11G006080 TRICHOME BIREFRINGENCE-LIKE 33 LENGTH=425 CG_Chr11 - View
Citrullus lanatus ClCG03G000630 TRICHOME BIREFRINGENCE-LIKE 45 LENGTH=398 CG_Chr03 - View
Cucumis melo MELO3C008304.2 Protein trichome birefringence-like 1 chr03 + View
Chenopodium quinoa AUR62012266 ESK1: Protein ESKIMO 1 C_Quinoa_Scaffold_1995 + View
Chenopodium quinoa AUR62022901 ESK1: Protein ESKIMO 1 C_Quinoa_Scaffold_3378 + View
Capsella rubella Carub.0004s1111 PTHR32285:SF14 - PROTEIN PMR5-RELATED scaffold_4 + View
Capsella rubella Carub.0004s2029 PTHR32285:SF11 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 scaffold_4 + View
Capsella rubella Carub.0006s0021 PTHR32285:SF32 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 35 scaffold_6 - View
Capsella rubella Carub.0004s2236 PTHR32285//PTHR32285:SF10 - FAMILY NOT NAMED // PROTEIN ESKIMO 1 scaffold_4 + View
Cucumis sativus L. CsaV3_4G026310 Protein trichome birefringence-like chr4 + View
Cucumis sativus L. CsaV3_6G001880 Protein ESKIMO 1 chr6 + View
Daucus carota DCAR_018669 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv10612 GWHABJS00000009 + View
Davidia involucrata Dinv28659 GWHABJS00000010 + View
Durio zibethinus Duzib106G1335 NW_019168492.1 + View
Durio zibethinus Duzib093G0160 NW_019167937.1 + View
Durio zibethinus Duzib168G1888 NW_019168159.1 - View
Durio zibethinus Duzib093G1960 NW_019167937.1 + View
Durio zibethinus Duzib150G1458 NW_019167882.1 + View
Erigeron canadensis ECA232G2536 Conyza_canadensis_scaffold:2 - View
Erigeron canadensis ECA247G2493 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA247G3428 Conyza_canadensis_scaffold:7 - View
Eucalyptus grandis Eucgr.A00614 Chr01 - View
Eucalyptus grandis Eucgr.K02955 Chr11 - View
Erythranthe guttata Migut.J00103 scaffold_10 - View
Erythranthe guttata Migut.L02024 scaffold_12 + View
Gossypium hirsutum Gohir.A13G014100 PTHR32285:SF62 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 33 A13 - View
Gossypium hirsutum Gohir.D04G131600 PTHR32285//PTHR32285:SF7 - FAMILY NOT NAMED // PROTEIN TRICHOME BIREFRINGENCE-LIKE 3 D04 + View
Gossypium hirsutum Gohir.A01G229601 PTHR32285:SF11 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 A01 + View
Glycine max Glyma.14G058500 PTHR32285//PTHR32285:SF10 - FAMILY NOT NAMED // PROTEIN ESKIMO 1 Gm14 - View
Glycine max Glyma.18G203100 PTHR32285//PTHR32285:SF7 - FAMILY NOT NAMED // PROTEIN TRICHOME BIREFRINGENCE-LIKE 3 Gm18 + View
Glycine max Glyma.02G258000 PTHR32285//PTHR32285:SF10 - FAMILY NOT NAMED // PROTEIN ESKIMO 1 Gm02 + View
Gossypium raimondii Gorai.002G266200 Chr02 + View
Gossypium raimondii Gorai.012G115400 Chr12 + View
Lupinus albus Lalb_Chr19g0124471 PTHR32285//PTHR32285:SF7 - FAMILY NOT NAMED // PROTEIN TRICHOME BIREFRINGENCE-LIKE 3 Lalb_Chr19 - View
Lupinus albus Lalb_Chr03g0043441 PTHR32285//PTHR32285:SF11 - FAMILY NOT NAMED // PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 Lalb_Chr03 + View
Lotus japonicus Lj1g0021791 PTHR32285:SF11 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 chr1 - View
Lonicera japonica Lj2A68G59 GWHAAZE00000002 - View
Lonicera japonica Lj1C958T4 GWHAAZE00000001 + View
Lonicera japonica Lj3C947T8 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_9_37580 Lsat_1_v8_lg_9 + View
Manihot esculenta Manes.08G093700 Chromosome08 + View
Manihot esculenta Manes.09G107400 Chromosome09 + View
Medicago truncatula Medtr4g014430 trichome birefringence-like protein chr4 - View
Nicotiana tabacum Nitab4.5_0000119g0090 PC-Esterase Nitab4.5_0000119 - View
Olea europaea Oeu038740.1 chr13 + View
Petunia axillaris Peaxi162Scf00014g00125 TRICHOME BIREFRINGENCE-LIKE 28 Peaxi162Scf00014 - View
Punica granatum PGR031G2147 NC_045127.1 - View
Punica granatum PGR004G2215 NC_045131.1 - View
Punica granatum PGR031G1125 NC_045127.1 + View
Populus trichocarpa Potri.016G125500 PTHR32285:SF11 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 Chr16 + View
Rhododendron simsii Rhsim05G0204300 chr05 - View
Rhododendron simsii Rhsim09G0177800 chr09 + View
Salix brachista Sabra08G0051500 GWHAAZH00000008 + View
Sechium edule Sed0027304 LG13 + View
Solanum lycopersicum Solyc10g076400.2 Protein trichome birefringence-like 34 (AHRD V3.3 *** A0A1U8F2S8_CAPAN) SL4.0ch10 - View
Solanum lycopersicum Solyc10g085320.2 Protein trichome birefringence-like 35 (AHRD V3.3 *** A0A2G2YM14_CAPAN) SL4.0ch10 + View
Solanum lycopersicum Solyc05g052430.3 protein trichome birefringence-like 33 (AHRD V3.3 *** A0A2I4EQL4_9ROSI) SL4.0ch05 - View
Schrenkiella parvula Sp4g20650 PTHR32285:SF11 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 34 ch4-6 + View
Schrenkiella parvula Sp4g12580 PTHR32285//PTHR32285:SF14 - FAMILY NOT NAMED // PROTEIN PMR5-RELATED ch4-6 + View
Solanum pennellii Sopen03g026110 Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). | ESKIMO 1 (ESK1) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: response to freezing, positive regulation of transcription, response to cold | LOCATED IN: cellular_component unknown | EXPRESSED IN: stem, fruit, root, flower, leaf | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 Spenn-ch03 - View
Solanum pennellii Sopen05g030980 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). | TRICHOME BIREFRINGENCE-LIKE 33 (TBL33) | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 32 Spenn-ch05 - View
Solanum pennellii Sopen10g034770 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). | TRICHOME BIREFRINGENCE-LIKE 35 (TBL35) | LOCATED IN: endomembrane system | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 34 . Spenn-ch10 + View
Solanum pennellii Sopen10g028050 Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff, Wolf Scheible, 2010, personal communication). | TRICHOME BIREFRINGENCE-LIKE 34 (TBL34) | INVOLVED IN: biological_process unknown | LOCATED IN: endomembrane system | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant | BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 35 Spenn-ch10 - View
Solanum tuberosum PGSC0003DMG400015896 Conserved gene of unknown function ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400011034 Conserved gene of unknown function ST4.03ch10 - View
Solanum tuberosum PGSC0003DMG400027219 Conserved gene of unknown function ST4.03ch05 - View
Selenicereus undatus Hund13876 Scaffold_33679 + View
Theobroma cacao Thecc.05G007800 Trichome birefringence-like 35 Chromosome_5 - View
Tarenaya hassleriana THA.LOC104810705 protein PMR5 NW_010965304.1 - View
Tarenaya hassleriana THA.LOC104823369 protein trichome birefringence-like 34 NW_010966881.1 - View
Tripterygium wilfordii TWI77G0799 NC_052236.1 + View
Tripterygium wilfordii TWI53G1059 NC_052244.1 + View
Tripterygium wilfordii TWI79G0841 NC_052238.1 - View
Tripterygium wilfordii TWI31G0490 NC_052233.1 - View
Utricularia gibba unitig_27.g24855 unitig_27 + View
Vaccinium macrocarpon vmacro08904 Similar to TBL34: Protein trichome birefringence-like 34 (Arabidopsis thaliana OX%3D3702) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro10036 Similar to ESK1: Protein ESKIMO 1 (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro14603 Similar to PMR5: Protein PMR5 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0647G1149 CM024073.1 + View
Vigna mungo VMungo1383G1167 CM024070.1 + View
Vitis vinifera GSVIVG01030284001 chr8 + View